Variant report

Variant	rs61991246
Chromosome Location	chr14:71859858-71859859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71785965..71788436-chr14:71858279..71859861,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 153 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs10483836	0.81[EUR][1000 genomes]
rs11848785	0.84[EUR][1000 genomes]
rs12127	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12878989	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879243	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12880188	0.81[EUR][1000 genomes]
rs12880291	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12880611	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12881643	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12881957	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12884929	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12885344	0.80[EUR][1000 genomes]
rs12887261	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12889866	0.87[EUR][1000 genomes]
rs12891975	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12892512	0.81[EUR][1000 genomes]
rs12894016	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12894478	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12896900	0.86[EUR][1000 genomes]
rs12896986	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs14030	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17178045	0.85[EUR][1000 genomes]
rs17178206	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17178234	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17178387	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17767386	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17767392	0.85[EUR][1000 genomes]
rs17767398	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17767410	0.86[EUR][1000 genomes]
rs17767446	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17767499	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17767523	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17767553	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17767680	0.81[EUR][1000 genomes]
rs17767686	0.81[EUR][1000 genomes]
rs1990241	0.86[EUR][1000 genomes]
rs2108049	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2108057	0.82[EUR][1000 genomes]
rs2108707	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2109276	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2877729	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs33994051	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34011442	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34057981	0.87[EUR][1000 genomes]
rs34061264	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34169215	0.81[EUR][1000 genomes]
rs34176710	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34281405	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34281934	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34320622	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34347034	0.87[EUR][1000 genomes]
rs34388001	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34454371	0.87[EUR][1000 genomes]
rs34469007	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34480562	0.81[EUR][1000 genomes]
rs34524083	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34528013	0.85[EUR][1000 genomes]
rs34528131	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34533948	0.88[EUR][1000 genomes]
rs34649709	0.87[EUR][1000 genomes]
rs34674149	0.86[EUR][1000 genomes]
rs34725136	0.88[EUR][1000 genomes]
rs34746156	0.87[EUR][1000 genomes]
rs34748537	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34767050	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34873919	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34911660	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34957192	0.83[EUR][1000 genomes]
rs34991781	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34993988	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35051046	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35054229	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35094946	0.87[EUR][1000 genomes]
rs35122644	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35151594	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35231795	0.81[EUR][1000 genomes]
rs35260692	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35415083	0.81[EUR][1000 genomes]
rs35468256	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35589413	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35609708	0.85[EUR][1000 genomes]
rs35613269	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35620527	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35621718	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35625243	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35680546	0.86[EUR][1000 genomes]
rs35692397	0.85[EUR][1000 genomes]
rs35760654	0.81[EUR][1000 genomes]
rs35796129	0.88[EUR][1000 genomes]
rs35822724	0.89[EUR][1000 genomes]
rs35831373	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35854505	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35866366	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971049	0.81[EUR][1000 genomes]
rs36052007	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36057816	0.85[EUR][1000 genomes]
rs36072220	0.81[EUR][1000 genomes]
rs36093218	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3784066	0.81[EUR][1000 genomes]
rs4453405	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4899394	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4902938	0.81[EUR][1000 genomes]
rs55883127	0.81[EUR][1000 genomes]
rs56180634	0.84[EUR][1000 genomes]
rs56363446	0.85[EUR][1000 genomes]
rs56407721	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61989367	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61989373	0.87[EUR][1000 genomes]
rs61989374	0.87[EUR][1000 genomes]
rs61989377	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61989379	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61989382	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61989383	0.81[EUR][1000 genomes]
rs61989386	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61991199	0.87[EUR][1000 genomes]
rs61991200	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61991201	0.87[EUR][1000 genomes]
rs61991202	0.88[EUR][1000 genomes]
rs61991203	0.85[EUR][1000 genomes]
rs61991204	0.85[EUR][1000 genomes]
rs61991205	0.86[EUR][1000 genomes]
rs61991213	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61991243	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61991247	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61991248	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61991249	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61991250	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61991254	0.83[EUR][1000 genomes]
rs61991255	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66645707	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67489015	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs68073803	0.88[EUR][1000 genomes]
rs7140354	0.85[EUR][1000 genomes]
rs7142180	0.85[EUR][1000 genomes]
rs7142214	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7145755	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7147434	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7147668	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7152674	0.81[EUR][1000 genomes]
rs7152842	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156460	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7157241	0.81[EUR][1000 genomes]
rs722633	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs723966	0.85[EUR][1000 genomes]
rs725673	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72728427	0.89[EUR][1000 genomes]
rs757850	0.81[EUR][1000 genomes]
rs8006300	0.84[EUR][1000 genomes]
rs8007068	0.89[EUR][1000 genomes]
rs8013161	0.84[EUR][1000 genomes]
rs8015644	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8019721	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672060	0.81[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71845000-71865200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:71845800-71865200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:71847600-71867600	Weak transcription	Fetal Lung	lung
4	chr14:71847600-71869000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:71848600-71867000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:71849800-71872200	Weak transcription	Fetal Intestine Small	intestine
7	chr14:71850600-71861000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:71850800-71862000	Weak transcription	Aorta	Aorta
9	chr14:71851200-71860200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr14:71851200-71874200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:71851400-71878200	Weak transcription	Pancreas	Pancrea
12	chr14:71851600-71860800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:71851800-71860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:71852200-71860200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:71852200-71860800	Weak transcription	Osteobl	bone
16	chr14:71853000-71860400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:71853800-71866800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:71855600-71864400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr14:71855800-71861400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:71856000-71866000	Weak transcription	NH-A	brain
21	chr14:71856200-71861000	Weak transcription	NHEK	skin
22	chr14:71856200-71865000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:71856600-71860200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:71856600-71860400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr14:71856600-71865200	Weak transcription	Colon Smooth Muscle	Colon
26	chr14:71856800-71860200	Weak transcription	Fetal Heart	heart
27	chr14:71857200-71861000	Enhancers	Primary B cells from peripheral blood	blood
28	chr14:71859000-71862000	Weak transcription	Spleen	Spleen
29	chr14:71859000-71864800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr14:71859000-71878200	Weak transcription	Lung	lung
31	chr14:71859200-71860400	Weak transcription	K562	blood
32	chr14:71859200-71860800	Weak transcription	GM12878-XiMat	blood
33	chr14:71859200-71867600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr14:71859400-71864600	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links