Variant report

Variant	rs61991249
Chromosome Location	chr14:71869546-71869547
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71869375..71872292-chr14:71882867..71885400,2	MCF-7	breast:
2	chr14:71785526..71791103-chr14:71867906..71872811,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259146	Chromatin interaction
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 153 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs10483836	0.82[EUR][1000 genomes]
rs11848785	0.85[EUR][1000 genomes]
rs12127	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12878989	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12879243	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12880188	0.82[EUR][1000 genomes]
rs12880291	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12880611	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12881643	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12881957	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12884929	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12885344	0.81[EUR][1000 genomes]
rs12887261	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12889866	0.88[EUR][1000 genomes]
rs12891975	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12892512	0.82[EUR][1000 genomes]
rs12894016	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12894478	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12896900	0.87[EUR][1000 genomes]
rs12896986	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs14030	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17178045	0.84[EUR][1000 genomes]
rs17178206	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17178234	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17178387	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17767386	0.85[EUR][1000 genomes]
rs17767392	0.85[EUR][1000 genomes]
rs17767398	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17767410	0.86[EUR][1000 genomes]
rs17767446	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17767499	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17767523	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17767553	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17767680	0.82[EUR][1000 genomes]
rs17767686	0.82[EUR][1000 genomes]
rs1990241	0.86[EUR][1000 genomes]
rs2108049	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2108057	0.83[EUR][1000 genomes]
rs2108707	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2109276	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2877729	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs33994051	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34011442	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34057981	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34061264	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34169215	0.82[EUR][1000 genomes]
rs34176710	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34281405	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34281934	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34320622	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34347034	0.88[EUR][1000 genomes]
rs34388001	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34454371	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34469007	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34480562	0.82[EUR][1000 genomes]
rs34524083	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34528013	0.85[EUR][1000 genomes]
rs34528131	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34533948	0.88[EUR][1000 genomes]
rs34649709	0.87[EUR][1000 genomes]
rs34674149	0.86[EUR][1000 genomes]
rs34725136	0.88[EUR][1000 genomes]
rs34746156	0.87[EUR][1000 genomes]
rs34748537	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34767050	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34873919	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34911660	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34957192	0.83[EUR][1000 genomes]
rs34991781	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34993988	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35051046	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35054229	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35094946	0.87[EUR][1000 genomes]
rs35122644	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35151594	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35231795	0.82[EUR][1000 genomes]
rs35260692	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35415083	0.82[EUR][1000 genomes]
rs35468256	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35589413	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35609708	0.86[EUR][1000 genomes]
rs35613269	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35620527	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35621718	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35625243	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35680546	0.87[EUR][1000 genomes]
rs35692397	0.84[EUR][1000 genomes]
rs35760654	0.82[EUR][1000 genomes]
rs35796129	0.88[EUR][1000 genomes]
rs35822724	0.88[EUR][1000 genomes]
rs35831373	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35854505	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35866366	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35971049	0.82[EUR][1000 genomes]
rs36052007	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36057816	0.85[EUR][1000 genomes]
rs36072220	0.82[EUR][1000 genomes]
rs36093218	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3784066	0.82[EUR][1000 genomes]
rs4453405	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4899394	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4902938	0.82[EUR][1000 genomes]
rs55883127	0.82[EUR][1000 genomes]
rs56180634	0.85[EUR][1000 genomes]
rs56363446	0.85[EUR][1000 genomes]
rs56407721	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61989367	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61989373	0.88[EUR][1000 genomes]
rs61989374	0.88[EUR][1000 genomes]
rs61989377	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61989379	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61989382	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61989383	0.82[EUR][1000 genomes]
rs61989386	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61991199	0.87[EUR][1000 genomes]
rs61991200	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61991201	0.87[EUR][1000 genomes]
rs61991202	0.88[EUR][1000 genomes]
rs61991203	0.85[EUR][1000 genomes]
rs61991204	0.85[EUR][1000 genomes]
rs61991205	0.86[EUR][1000 genomes]
rs61991213	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61991243	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61991246	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61991247	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61991248	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61991250	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61991254	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61991255	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66645707	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67489015	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs68073803	0.88[EUR][1000 genomes]
rs7140354	0.85[EUR][1000 genomes]
rs7142180	0.85[EUR][1000 genomes]
rs7142214	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7145755	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7147434	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7147668	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7152674	0.82[EUR][1000 genomes]
rs7152842	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7156460	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7157241	0.82[EUR][1000 genomes]
rs722633	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs723966	0.85[EUR][1000 genomes]
rs725673	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72728427	0.88[EUR][1000 genomes]
rs757850	0.82[EUR][1000 genomes]
rs8006300	0.84[EUR][1000 genomes]
rs8007068	0.88[EUR][1000 genomes]
rs8013161	0.85[EUR][1000 genomes]
rs8015644	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8019721	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9672060	0.82[EUR][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71849800-71872200	Weak transcription	Fetal Intestine Small	intestine
2	chr14:71851200-71874200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:71851400-71878200	Weak transcription	Pancreas	Pancrea
4	chr14:71859000-71878200	Weak transcription	Lung	lung
5	chr14:71861000-71885200	Weak transcription	K562	blood
6	chr14:71861400-71875200	Weak transcription	Brain Anterior Caudate	brain
7	chr14:71862000-71871400	Enhancers	Primary B cells from peripheral blood	blood
8	chr14:71862600-71878200	Weak transcription	Spleen	Spleen
9	chr14:71863200-71874200	Weak transcription	Aorta	Aorta
10	chr14:71866000-71877400	Weak transcription	Stomach Mucosa	stomach
11	chr14:71866000-71877600	Weak transcription	HepG2	liver
12	chr14:71866000-71889000	Weak transcription	Dnd41	blood
13	chr14:71866200-71870400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr14:71866200-71875000	Weak transcription	NH-A	brain
15	chr14:71866800-71875400	Weak transcription	Fetal Thymus	thymus
16	chr14:71867000-71875200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr14:71867200-71892200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr14:71867400-71869800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:71867400-71869800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr14:71867600-71869600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:71867800-71870000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr14:71867800-71877400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr14:71867800-71881600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr14:71867800-71885000	Weak transcription	Brain Substantia Nigra	brain
25	chr14:71868000-71869600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:71868000-71869800	Enhancers	Osteobl	bone
27	chr14:71868000-71870200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr14:71868000-71870400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr14:71868000-71871200	Enhancers	GM12878-XiMat	blood
30	chr14:71868000-71872000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:71868000-71874600	Weak transcription	Fetal Heart	heart
32	chr14:71868000-71875000	Weak transcription	HSMMtube	muscle
33	chr14:71868000-71875200	Weak transcription	HSMM	muscle
34	chr14:71868000-71875600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr14:71868000-71876600	Weak transcription	Fetal Lung	lung
36	chr14:71868000-71878000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr14:71868000-71878200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:71868200-71869800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr14:71868200-71870000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr14:71868200-71872000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:71868200-71875200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr14:71868200-71877400	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr14:71868200-71891400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr14:71868400-71869800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr14:71868400-71870400	Weak transcription	Primary T cells from cord blood	blood
46	chr14:71868400-71875200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr14:71868400-71878200	Weak transcription	HMEC	breast
48	chr14:71868400-71881200	Weak transcription	NHLF	lung
49	chr14:71868800-71870000	Weak transcription	Primary B cells from cord blood	blood
50	chr14:71869000-71869600	Enhancers	NHDF-Ad	bronchial

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