Variant report

Variant	rs34061264
Chromosome Location	chr14:71785276-71785277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:71784515-71785319	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71780085..71783168-chr14:71784973..71787067,3	K562	blood:
2	chr14:71776798..71778756-chr14:71785140..71789113,3	MCF-7	breast:

Variant related genes	Relation type
SIPA1L1	TF binding region
ENSG00000259146	Chromatin interaction

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs11620632	0.80[ASN][1000 genomes]
rs11627918	0.80[ASN][1000 genomes]
rs11845249	0.80[ASN][1000 genomes]
rs11849508	0.80[ASN][1000 genomes]
rs12127	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12878989	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12879243	0.85[EUR][1000 genomes]
rs12880291	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12880611	0.86[EUR][1000 genomes]
rs12881643	0.88[EUR][1000 genomes]
rs12881957	0.88[EUR][1000 genomes]
rs12884929	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12887261	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12889866	0.86[EUR][1000 genomes]
rs12891975	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12894016	0.85[EUR][1000 genomes]
rs12894478	0.88[EUR][1000 genomes]
rs12896900	0.84[EUR][1000 genomes]
rs12896986	0.86[EUR][1000 genomes]
rs14030	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17178045	0.87[EUR][1000 genomes]
rs17178206	0.86[EUR][1000 genomes]
rs17178234	0.86[EUR][1000 genomes]
rs17178387	0.84[EUR][1000 genomes]
rs17767386	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17767392	0.88[EUR][1000 genomes]
rs17767398	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17767410	0.88[EUR][1000 genomes]
rs17767446	0.89[EUR][1000 genomes]
rs17767499	0.88[EUR][1000 genomes]
rs17767523	0.86[EUR][1000 genomes]
rs17767553	0.86[EUR][1000 genomes]
rs1990241	0.88[EUR][1000 genomes]
rs2108049	0.86[EUR][1000 genomes]
rs2108707	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2109276	0.86[EUR][1000 genomes]
rs2877729	0.85[EUR][1000 genomes]
rs33994051	0.86[EUR][1000 genomes]
rs34011442	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34057981	0.85[EUR][1000 genomes]
rs34176710	0.84[EUR][1000 genomes]
rs34281405	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34281934	0.86[EUR][1000 genomes]
rs34320622	0.86[EUR][1000 genomes]
rs34347034	0.85[EUR][1000 genomes]
rs34388001	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34454371	0.85[EUR][1000 genomes]
rs34469007	0.86[EUR][1000 genomes]
rs34524083	0.89[EUR][1000 genomes]
rs34528013	0.88[EUR][1000 genomes]
rs34528131	0.89[EUR][1000 genomes]
rs34533948	0.90[EUR][1000 genomes]
rs34649709	0.90[EUR][1000 genomes]
rs34674149	0.88[EUR][1000 genomes]
rs34725136	0.90[EUR][1000 genomes]
rs34746156	0.90[EUR][1000 genomes]
rs34748537	0.89[EUR][1000 genomes]
rs34767050	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34873919	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34911660	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34957192	0.86[EUR][1000 genomes]
rs34991781	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34993988	0.88[EUR][1000 genomes]
rs35051046	0.88[EUR][1000 genomes]
rs35054229	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35094946	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35122644	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35151594	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35260692	0.89[EUR][1000 genomes]
rs35468256	0.88[EUR][1000 genomes]
rs35589413	0.83[EUR][1000 genomes]
rs35609708	0.84[EUR][1000 genomes]
rs35613269	0.86[EUR][1000 genomes]
rs35620527	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35621718	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35625243	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35680546	0.84[EUR][1000 genomes]
rs35692397	0.87[EUR][1000 genomes]
rs35796129	0.90[EUR][1000 genomes]
rs35822724	0.91[EUR][1000 genomes]
rs35831373	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35854505	0.88[EUR][1000 genomes]
rs35866366	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36052007	0.84[EUR][1000 genomes]
rs36057816	0.88[EUR][1000 genomes]
rs36093218	0.87[EUR][1000 genomes]
rs4453405	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4899394	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902928	0.84[ASN][1000 genomes]
rs56180634	0.81[EUR][1000 genomes]
rs56363446	0.88[EUR][1000 genomes]
rs56407721	0.88[EUR][1000 genomes]
rs59697713	0.80[ASN][1000 genomes]
rs61989245	0.80[ASN][1000 genomes]
rs61989246	0.80[ASN][1000 genomes]
rs61989247	0.80[ASN][1000 genomes]
rs61989250	0.80[ASN][1000 genomes]
rs61989257	0.80[ASN][1000 genomes]
rs61989367	0.86[EUR][1000 genomes]
rs61989373	0.86[EUR][1000 genomes]
rs61989374	0.86[EUR][1000 genomes]
rs61989377	0.85[EUR][1000 genomes]
rs61989379	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61989382	0.84[EUR][1000 genomes]
rs61989386	0.84[EUR][1000 genomes]
rs61991192	0.84[ASN][1000 genomes]
rs61991199	0.90[EUR][1000 genomes]
rs61991200	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61991201	0.90[EUR][1000 genomes]
rs61991202	0.90[EUR][1000 genomes]
rs61991203	0.88[EUR][1000 genomes]
rs61991204	0.88[EUR][1000 genomes]
rs61991205	0.88[EUR][1000 genomes]
rs61991213	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61991243	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61991246	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61991247	0.89[EUR][1000 genomes]
rs61991248	0.89[EUR][1000 genomes]
rs61991249	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61991250	0.88[EUR][1000 genomes]
rs61991254	0.82[EUR][1000 genomes]
rs61991255	0.86[EUR][1000 genomes]
rs66645707	0.84[EUR][1000 genomes]
rs67489015	0.88[EUR][1000 genomes]
rs68073803	0.90[EUR][1000 genomes]
rs7140354	0.88[EUR][1000 genomes]
rs7142180	0.88[EUR][1000 genomes]
rs7142214	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7145755	0.88[EUR][1000 genomes]
rs7147434	0.90[EUR][1000 genomes]
rs7147668	0.89[EUR][1000 genomes]
rs7152842	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7156460	0.89[EUR][1000 genomes]
rs7160460	0.80[ASN][1000 genomes]
rs722633	0.86[EUR][1000 genomes]
rs723966	0.88[EUR][1000 genomes]
rs725673	0.86[EUR][1000 genomes]
rs72726701	0.80[ASN][1000 genomes]
rs72726702	0.82[ASN][1000 genomes]
rs72728403	0.84[ASN][1000 genomes]
rs72728427	0.91[EUR][1000 genomes]
rs8007068	0.91[EUR][1000 genomes]
rs8013161	0.81[EUR][1000 genomes]
rs8015644	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8019721	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71771800-71786400	Weak transcription	Pancreas	Pancrea
2	chr14:71772800-71786200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:71779800-71786400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:71781800-71786400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:71781800-71786400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:71782000-71786200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:71782200-71786200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:71784400-71786200	Weak transcription	NHDF-Ad	bronchial
9	chr14:71784400-71786400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:71784400-71786400	Weak transcription	Fetal Muscle Leg	muscle
11	chr14:71784600-71786400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:71784600-71786400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:71784600-71786400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:71784600-71786400	Weak transcription	Left Ventricle	heart
15	chr14:71784600-71786400	Weak transcription	Spleen	Spleen
16	chr14:71784800-71786200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr14:71785000-71785800	Weak transcription	Fetal Heart	heart
18	chr14:71785000-71786200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:71785000-71786200	Weak transcription	Liver	Liver
20	chr14:71785000-71786400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links