Variant report

Variant	rs35866366
Chromosome Location	chr14:71849185-71849186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71786761..71788679-chr14:71848799..71851715,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259146	Chromatin interaction
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 172 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:172)

rs_ID	r²[population]
rs10135680	0.80[EUR][1000 genomes]
rs10483836	0.84[EUR][1000 genomes]
rs11848785	0.85[EUR][1000 genomes]
rs12127	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12433040	0.81[EUR][1000 genomes]
rs12878989	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879243	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12880188	0.81[EUR][1000 genomes]
rs12880291	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12880611	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12881643	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12881957	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12884929	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12885344	0.83[EUR][1000 genomes]
rs12887261	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12889866	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12891975	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12892512	0.84[EUR][1000 genomes]
rs12894016	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12894478	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12896900	0.89[EUR][1000 genomes]
rs12896986	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs14030	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17178045	0.87[EUR][1000 genomes]
rs17178206	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17178234	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17178387	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17767386	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17767392	0.87[EUR][1000 genomes]
rs17767398	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17767410	0.88[EUR][1000 genomes]
rs17767446	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17767499	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17767523	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17767553	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17767680	0.81[EUR][1000 genomes]
rs17767686	0.81[EUR][1000 genomes]
rs1981588	0.81[EUR][1000 genomes]
rs1990241	0.88[EUR][1000 genomes]
rs2108049	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2108057	0.83[EUR][1000 genomes]
rs2108707	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2109276	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2214836	0.81[EUR][1000 genomes]
rs2332638	0.81[EUR][1000 genomes]
rs2332641	0.80[EUR][1000 genomes]
rs2877729	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs33994051	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34011442	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34057981	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34061264	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34169215	0.84[EUR][1000 genomes]
rs34176710	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34281405	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34281934	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34320622	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34347034	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34388001	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34454371	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34469007	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34480562	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34524083	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34528013	0.87[EUR][1000 genomes]
rs34528131	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34533948	0.85[EUR][1000 genomes]
rs34649709	0.84[EUR][1000 genomes]
rs34674149	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34725136	0.85[EUR][1000 genomes]
rs34746156	0.84[EUR][1000 genomes]
rs34748537	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34767050	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34873919	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34911660	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34957192	0.85[EUR][1000 genomes]
rs34991781	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34993988	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35051046	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35054229	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35094946	0.84[EUR][1000 genomes]
rs35122644	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35151594	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35231795	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35260692	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35415083	0.84[EUR][1000 genomes]
rs35468256	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35589413	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35609708	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35613269	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35620527	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35621718	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35625243	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35680546	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35692397	0.87[EUR][1000 genomes]
rs35760654	0.84[EUR][1000 genomes]
rs35796129	0.85[EUR][1000 genomes]
rs35822724	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35831373	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35854505	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35971049	0.81[EUR][1000 genomes]
rs36052007	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36057816	0.87[EUR][1000 genomes]
rs36072220	0.83[EUR][1000 genomes]
rs36093218	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3784062	0.81[EUR][1000 genomes]
rs3784064	0.81[EUR][1000 genomes]
rs3784066	0.84[EUR][1000 genomes]
rs3825719	0.81[EUR][1000 genomes]
rs4453405	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4899394	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4899398	0.81[EUR][1000 genomes]
rs4902938	0.84[EUR][1000 genomes]
rs55883127	0.84[EUR][1000 genomes]
rs56180634	0.85[EUR][1000 genomes]
rs56363446	0.87[EUR][1000 genomes]
rs56407721	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61989367	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61989373	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61989374	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61989377	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61989379	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61989382	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61989383	0.81[EUR][1000 genomes]
rs61989386	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61991199	0.84[EUR][1000 genomes]
rs61991200	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61991201	0.84[EUR][1000 genomes]
rs61991202	0.85[EUR][1000 genomes]
rs61991203	0.87[EUR][1000 genomes]
rs61991204	0.87[EUR][1000 genomes]
rs61991205	0.88[EUR][1000 genomes]
rs61991213	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61991243	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61991246	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61991247	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61991248	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61991249	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61991250	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61991254	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61991255	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6574016	0.81[EUR][1000 genomes]
rs66645707	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67489015	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs68073803	0.85[EUR][1000 genomes]
rs7140354	0.87[EUR][1000 genomes]
rs7142180	0.87[EUR][1000 genomes]
rs7142214	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7142343	0.81[EUR][1000 genomes]
rs7144299	0.81[EUR][1000 genomes]
rs7144829	0.81[EUR][1000 genomes]
rs7145755	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7147434	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7147668	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7152674	0.81[EUR][1000 genomes]
rs7152842	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154841	0.81[EUR][1000 genomes]
rs7156313	0.81[EUR][1000 genomes]
rs7156460	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7157241	0.81[EUR][1000 genomes]
rs722633	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs723966	0.87[EUR][1000 genomes]
rs725673	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72728427	0.85[EUR][1000 genomes]
rs757850	0.81[EUR][1000 genomes]
rs8006300	0.84[EUR][1000 genomes]
rs8007068	0.85[EUR][1000 genomes]
rs8008605	0.81[EUR][1000 genomes]
rs8013161	0.85[EUR][1000 genomes]
rs8014349	0.81[EUR][1000 genomes]
rs8015644	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8019721	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323561	0.81[EUR][1000 genomes]
rs9672060	0.81[EUR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71837400-71855800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:71844800-71852600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:71844800-71858600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:71845000-71850800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr14:71845000-71865200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:71845200-71852200	Enhancers	Fetal Heart	heart
7	chr14:71845200-71854400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:71845800-71865200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:71846000-71855600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr14:71846200-71857400	Weak transcription	Primary B cells from cord blood	blood
11	chr14:71846400-71850400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:71846800-71850600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:71847000-71849600	Enhancers	Stomach Mucosa	stomach
14	chr14:71847000-71851200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:71847200-71849600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr14:71847200-71852800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:71847400-71849200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr14:71847400-71851000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:71847400-71851200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr14:71847400-71854000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr14:71847400-71855800	Weak transcription	NH-A	brain
22	chr14:71847600-71850200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr14:71847600-71850200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:71847600-71850600	Weak transcription	NHEK	skin
25	chr14:71847600-71854600	Weak transcription	Hela-S3	cervix
26	chr14:71847600-71867600	Weak transcription	Fetal Lung	lung
27	chr14:71847600-71869000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:71847800-71849400	Weak transcription	NHDF-Ad	bronchial
29	chr14:71847800-71850200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:71847800-71851000	Weak transcription	Osteobl	bone
31	chr14:71848600-71867000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:71848800-71849800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:71848800-71850800	Enhancers	Primary B cells from peripheral blood	blood
34	chr14:71849000-71849200	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr14:71849000-71849800	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr14:71849000-71850600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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