Variant report

Variant	rs2332641
Chromosome Location	chr14:72044728-72044729
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72044562..72046264-chr14:72073210..72075565,2	MCF-7	breast:
2	chr14:72044399..72046285-chr14:72058005..72060824,2	K562	blood:

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10133626	1.00[JPT][hapmap]
rs10135680	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10138557	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1029570	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483836	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10873246	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11848785	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1204995	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1204996	1.00[JPT][hapmap]
rs12127	0.80[EUR][1000 genomes]
rs12433040	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12878989	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs12879243	0.88[EUR][1000 genomes]
rs12880188	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12880291	0.80[EUR][1000 genomes]
rs12880611	0.88[EUR][1000 genomes]
rs12881643	0.86[EUR][1000 genomes]
rs12881957	0.86[EUR][1000 genomes]
rs12885344	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12887261	0.80[EUR][1000 genomes]
rs12889866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs12892512	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12894016	0.88[EUR][1000 genomes]
rs12894478	0.84[EUR][1000 genomes]
rs12896900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12896986	0.88[EUR][1000 genomes]
rs14030	0.80[EUR][1000 genomes]
rs17178206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs17178234	0.88[EUR][1000 genomes]
rs17178387	0.87[EUR][1000 genomes]
rs17767446	0.85[EUR][1000 genomes]
rs17767499	0.86[EUR][1000 genomes]
rs17767523	0.88[EUR][1000 genomes]
rs17767553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs17767680	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17767686	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1859643	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2108049	0.88[EUR][1000 genomes]
rs2108057	0.88[CEU][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2109276	0.88[EUR][1000 genomes]
rs2190240	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2214836	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2286136	1.00[JPT][hapmap]
rs2332638	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2332640	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs28859432	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33994051	0.88[EUR][1000 genomes]
rs34057981	0.81[EUR][1000 genomes]
rs34169215	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34176710	0.87[EUR][1000 genomes]
rs34281934	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34320622	0.88[EUR][1000 genomes]
rs34347034	0.88[EUR][1000 genomes]
rs34388001	0.80[EUR][1000 genomes]
rs34454371	0.88[EUR][1000 genomes]
rs34469007	0.88[EUR][1000 genomes]
rs34480562	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34524083	0.85[EUR][1000 genomes]
rs34528131	0.85[EUR][1000 genomes]
rs34748537	0.85[EUR][1000 genomes]
rs34993988	0.86[EUR][1000 genomes]
rs35051046	0.86[EUR][1000 genomes]
rs35231795	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35260692	0.85[EUR][1000 genomes]
rs35415083	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35468256	0.86[EUR][1000 genomes]
rs35589413	0.86[EUR][1000 genomes]
rs35609708	0.81[EUR][1000 genomes]
rs35613269	0.88[EUR][1000 genomes]
rs35620527	0.80[EUR][1000 genomes]
rs35680546	0.87[EUR][1000 genomes]
rs35760654	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35854505	0.86[EUR][1000 genomes]
rs35866366	0.80[EUR][1000 genomes]
rs35971049	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36052007	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36072220	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36093218	0.87[EUR][1000 genomes]
rs3784062	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3784064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784066	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3825719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4140797	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4319698	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4899398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902938	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902941	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902942	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55883127	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56180634	0.84[EUR][1000 genomes]
rs56407721	0.86[EUR][1000 genomes]
rs61989367	0.88[EUR][1000 genomes]
rs61989373	0.88[EUR][1000 genomes]
rs61989374	0.88[EUR][1000 genomes]
rs61989377	0.88[EUR][1000 genomes]
rs61989379	0.80[EUR][1000 genomes]
rs61989382	0.87[EUR][1000 genomes]
rs61989383	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61989386	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61989417	0.81[AFR][1000 genomes]
rs61991247	0.85[EUR][1000 genomes]
rs61991248	0.85[EUR][1000 genomes]
rs61991250	0.85[EUR][1000 genomes]
rs61991254	0.85[EUR][1000 genomes]
rs61991255	0.88[EUR][1000 genomes]
rs6574015	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574016	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66645707	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67489015	0.86[EUR][1000 genomes]
rs7140501	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7142343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7144299	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144829	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145755	0.86[EUR][1000 genomes]
rs7147434	0.84[EUR][1000 genomes]
rs7147668	0.85[EUR][1000 genomes]
rs7148679	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7152674	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7152842	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs7154787	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7154841	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7156313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156460	0.85[EUR][1000 genomes]
rs7157241	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs722633	0.88[EUR][1000 genomes]
rs725673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs757850	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8003478	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8006300	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8008605	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010616	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8013161	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8014349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017775	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9323561	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9672060	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72024400-72052400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:72030600-72048800	Weak transcription	Fetal Kidney	kidney
3	chr14:72031000-72052600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:72035200-72053400	Weak transcription	Spleen	Spleen
5	chr14:72035600-72054600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:72037200-72051000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:72039400-72064400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr14:72040800-72048800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr14:72041200-72048600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:72041200-72050800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:72041200-72052600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr14:72041400-72049800	Weak transcription	Fetal Thymus	thymus
13	chr14:72041400-72052600	Weak transcription	Primary B cells from cord blood	blood
14	chr14:72041400-72054200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr14:72042000-72046200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr14:72042000-72058400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:72042000-72058600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr14:72042000-72058800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr14:72042000-72069400	Weak transcription	Lung	lung
20	chr14:72042200-72046400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr14:72042200-72048800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr14:72042200-72049200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr14:72042200-72054400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr14:72042200-72058400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr14:72042200-72058600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr14:72042200-72058600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:72042800-72050000	Weak transcription	Fetal Stomach	stomach
28	chr14:72043000-72049200	Weak transcription	HSMMtube	muscle
29	chr14:72043000-72054400	Weak transcription	GM12878-XiMat	blood
30	chr14:72043200-72045000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:72043200-72045600	Weak transcription	Fetal Lung	lung
32	chr14:72043200-72047600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr14:72043200-72048000	Weak transcription	NH-A	brain
34	chr14:72043200-72048600	Weak transcription	HSMM	muscle
35	chr14:72043200-72052200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:72043200-72052600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr14:72043200-72052600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr14:72043400-72045400	Weak transcription	Brain Hippocampus Middle	brain
39	chr14:72043400-72046200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr14:72043400-72047600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr14:72043400-72047600	Weak transcription	Osteobl	bone
42	chr14:72043400-72049800	Weak transcription	Brain Angular Gyrus	brain
43	chr14:72043400-72050200	Weak transcription	Brain Substantia Nigra	brain
44	chr14:72043400-72050600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr14:72043400-72059200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:72043600-72046000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:72043600-72046600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr14:72043600-72049200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr14:72044000-72049800	Weak transcription	Brain Anterior Caudate	brain
50	chr14:72044200-72048600	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links