Variant report

Variant	rs4319698
Chromosome Location	chr14:72147443-72147444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C14orf57-2	chr14:72145495-72149556	ucscGeneNc_uc010arh_1

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10135680	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10138557	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10139519	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1029570	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10483836	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10873246	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433040	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12880188	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12885344	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12892512	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17767680	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17767686	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1859643	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1981588	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2190240	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2214836	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2332638	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2332640	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2332641	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34169215	0.83[EUR][1000 genomes]
rs34480562	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35231795	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35415083	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35760654	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35971049	0.80[EUR][1000 genomes]
rs36072220	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3784062	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3784064	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3784066	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3825719	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4140797	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4899398	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902938	0.83[EUR][1000 genomes]
rs4902941	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902942	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55883127	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61989383	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6574015	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6574016	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7140501	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7142343	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7144299	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7144829	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7148679	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7152674	0.80[EUR][1000 genomes]
rs7154787	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7154841	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7156313	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7157241	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs757850	0.80[EUR][1000 genomes]
rs8003478	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8008605	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8010616	0.80[EUR][1000 genomes]
rs8014349	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8017775	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9323561	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9672060	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72088200-72159600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:72109800-72150800	Weak transcription	Colonic Mucosa	Colon
3	chr14:72118600-72191400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr14:72119200-72152200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:72125400-72151000	Weak transcription	Ovary	ovary
6	chr14:72126200-72159800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:72128000-72167800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:72128800-72147800	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:72129400-72153600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr14:72129400-72196800	Weak transcription	Right Ventricle	heart
11	chr14:72131800-72154000	Weak transcription	Fetal Heart	heart
12	chr14:72134000-72153200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:72134200-72151000	Weak transcription	NHDF-Ad	bronchial
14	chr14:72134200-72159000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:72139400-72153600	Weak transcription	Fetal Kidney	kidney
16	chr14:72139600-72147600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr14:72139600-72150600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr14:72139600-72150800	Weak transcription	NHLF	lung
19	chr14:72139600-72151000	Weak transcription	Left Ventricle	heart
20	chr14:72139600-72151000	Weak transcription	Thymus	Thymus
21	chr14:72139600-72153800	Weak transcription	Fetal Lung	lung
22	chr14:72139800-72150600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr14:72139800-72150800	Weak transcription	HSMMtube	muscle
24	chr14:72139800-72155200	Weak transcription	Placenta	Placenta
25	chr14:72140000-72147600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr14:72140000-72150800	Weak transcription	HepG2	liver
27	chr14:72140000-72151000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr14:72140000-72151000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr14:72140000-72151800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr14:72140000-72156800	Weak transcription	Fetal Thymus	thymus
31	chr14:72140000-72165800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:72140400-72148400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr14:72140400-72152000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:72140600-72176000	Weak transcription	Hela-S3	cervix
35	chr14:72142000-72147600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr14:72142000-72147600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr14:72142000-72151000	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr14:72142000-72151000	Weak transcription	Aorta	Aorta
39	chr14:72142000-72151000	Weak transcription	Gastric	stomach
40	chr14:72142000-72153400	Weak transcription	Fetal Muscle Leg	muscle
41	chr14:72142000-72191400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr14:72142200-72150800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:72142200-72150800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr14:72142200-72151000	Weak transcription	Adipose Nuclei	Adipose
45	chr14:72142400-72150600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr14:72142400-72150600	Weak transcription	Primary T cells from cord blood	blood
47	chr14:72142400-72150600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:72142400-72151600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr14:72142400-72153600	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr14:72142400-72153600	Weak transcription	HSMM	muscle

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