Variant report

Variant	rs4902942
Chromosome Location	chr14:72140659-72140660
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72137014..72139027-chr14:72140131..72141987,2	K562	blood:
2	chr14:72136543..72138514-chr14:72140123..72141987,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10133626	1.00[JPT][hapmap]
rs10135680	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10138557	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10139519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1029570	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10483836	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10873246	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1204995	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1204996	1.00[JPT][hapmap]
rs12433040	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12880188	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12885344	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12892512	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12896900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17767680	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17767686	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1859643	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1981588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2108057	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs2190240	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2214836	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2286136	1.00[JPT][hapmap]
rs2332638	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2332640	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2332641	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34169215	0.85[EUR][1000 genomes]
rs34480562	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35231795	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35415083	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35760654	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35971049	0.82[EUR][1000 genomes]
rs36072220	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3784062	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3784064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3784066	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3825719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4140797	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4319698	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902938	0.85[EUR][1000 genomes]
rs4902941	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55883127	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61989383	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6574015	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6574016	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7140501	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7142343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7144299	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7144829	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7148679	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7152674	0.82[EUR][1000 genomes]
rs7154787	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7154841	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7156313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7157241	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7350725	1.00[JPT][hapmap]
rs757850	0.82[EUR][1000 genomes]
rs8003478	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8006300	0.91[CEU][hapmap]
rs8008605	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8010616	0.82[EUR][1000 genomes]
rs8014349	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8017775	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9323561	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9672060	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72088200-72159600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:72109800-72150800	Weak transcription	Colonic Mucosa	Colon
3	chr14:72113800-72141600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:72118600-72142000	Weak transcription	Fetal Brain Male	brain
5	chr14:72118600-72191400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:72119000-72141800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:72119200-72152200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr14:72119800-72147400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:72123800-72146800	Weak transcription	Psoas Muscle	Psoas
10	chr14:72125400-72142000	Weak transcription	Small Intestine	intestine
11	chr14:72125400-72151000	Weak transcription	Ovary	ovary
12	chr14:72126200-72159800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr14:72126400-72142400	Weak transcription	Stomach Mucosa	stomach
14	chr14:72126600-72141200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr14:72128000-72167800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr14:72128600-72141600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr14:72128600-72142200	Weak transcription	Fetal Brain Female	brain
18	chr14:72128800-72147800	Weak transcription	Colon Smooth Muscle	Colon
19	chr14:72129400-72141800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:72129400-72153600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr14:72129400-72196800	Weak transcription	Right Ventricle	heart
22	chr14:72131800-72154000	Weak transcription	Fetal Heart	heart
23	chr14:72134000-72153200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:72134200-72151000	Weak transcription	NHDF-Ad	bronchial
25	chr14:72134200-72159000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:72135000-72142600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr14:72135600-72140800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr14:72136000-72141800	Weak transcription	Brain Germinal Matrix	brain
29	chr14:72137200-72143200	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr14:72137400-72141600	Strong transcription	Osteobl	bone
31	chr14:72137400-72142400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr14:72137600-72142600	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr14:72137800-72140800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr14:72137800-72141000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr14:72137800-72141200	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr14:72137800-72141800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr14:72137800-72142600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr14:72137800-72142600	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr14:72137800-72142600	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr14:72137800-72142600	Strong transcription	Duodenum Mucosa	Duodenum
41	chr14:72137800-72142600	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr14:72137800-72143200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr14:72137800-72143200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr14:72138000-72140800	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr14:72138000-72140800	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr14:72138000-72142000	Strong transcription	Gastric	stomach
47	chr14:72138000-72142200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr14:72138000-72142400	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr14:72138000-72142600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr14:72138000-72142600	Strong transcription	Fetal Intestine Large	intestine

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