Variant report

Variant	rs7140501
Chromosome Location	chr14:72023175-72023176
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71787679..71789228-chr14:72021857..72023772,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259146	Chromatin interaction
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10133626	1.00[JPT][hapmap]
rs10135680	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138557	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10139519	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1029570	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10483836	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10873246	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11848785	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1204995	1.00[JPT][hapmap]
rs1204996	1.00[JPT][hapmap]
rs12127	0.81[EUR][1000 genomes]
rs12433040	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12878989	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs12879243	0.86[EUR][1000 genomes]
rs12880188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12880291	0.81[EUR][1000 genomes]
rs12880611	0.86[EUR][1000 genomes]
rs12881643	0.84[EUR][1000 genomes]
rs12881957	0.87[EUR][1000 genomes]
rs12885344	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12887261	0.81[EUR][1000 genomes]
rs12889866	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs12892512	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12894016	0.86[EUR][1000 genomes]
rs12894478	0.82[EUR][1000 genomes]
rs12896900	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12896986	0.86[EUR][1000 genomes]
rs14030	0.81[EUR][1000 genomes]
rs17178206	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs17178234	0.86[EUR][1000 genomes]
rs17178387	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17767446	0.83[EUR][1000 genomes]
rs17767499	0.84[EUR][1000 genomes]
rs17767523	0.86[EUR][1000 genomes]
rs17767553	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs17767680	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17767686	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1859643	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1981588	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2108049	0.86[EUR][1000 genomes]
rs2108057	0.96[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2108707	0.81[EUR][1000 genomes]
rs2109276	0.86[EUR][1000 genomes]
rs2190240	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214836	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286136	1.00[JPT][hapmap]
rs2332638	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332640	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2332641	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2877729	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs28859432	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33994051	0.86[EUR][1000 genomes]
rs34169215	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34176710	0.85[EUR][1000 genomes]
rs34281934	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34320622	0.86[EUR][1000 genomes]
rs34347034	0.86[EUR][1000 genomes]
rs34388001	0.81[EUR][1000 genomes]
rs34454371	0.86[EUR][1000 genomes]
rs34469007	0.86[EUR][1000 genomes]
rs34480562	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34524083	0.83[EUR][1000 genomes]
rs34528131	0.83[EUR][1000 genomes]
rs34748537	0.83[EUR][1000 genomes]
rs34991781	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34993988	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35051046	0.84[EUR][1000 genomes]
rs35054229	0.81[EUR][1000 genomes]
rs35231795	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35260692	0.83[EUR][1000 genomes]
rs35415083	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35468256	0.84[EUR][1000 genomes]
rs35589413	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35613269	0.86[EUR][1000 genomes]
rs35620527	0.81[EUR][1000 genomes]
rs35680546	0.85[EUR][1000 genomes]
rs35760654	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35831373	0.80[EUR][1000 genomes]
rs35854505	0.84[EUR][1000 genomes]
rs35971049	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36052007	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36072220	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36093218	0.85[EUR][1000 genomes]
rs3784062	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3784064	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3784066	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3825719	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4140797	0.82[EUR][1000 genomes]
rs4319698	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4899398	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902938	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902941	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902942	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55883127	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56180634	0.88[EUR][1000 genomes]
rs56407721	0.87[EUR][1000 genomes]
rs61989367	0.86[EUR][1000 genomes]
rs61989373	0.86[EUR][1000 genomes]
rs61989374	0.86[EUR][1000 genomes]
rs61989377	0.86[EUR][1000 genomes]
rs61989379	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61989382	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61989383	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61989386	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61991247	0.83[EUR][1000 genomes]
rs61991248	0.83[EUR][1000 genomes]
rs61991250	0.83[EUR][1000 genomes]
rs61991254	0.83[EUR][1000 genomes]
rs61991255	0.86[EUR][1000 genomes]
rs6574015	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574016	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66645707	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67489015	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7142343	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144299	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7144829	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7145755	0.84[EUR][1000 genomes]
rs7147434	0.82[EUR][1000 genomes]
rs7147668	0.83[EUR][1000 genomes]
rs7148679	0.82[EUR][1000 genomes]
rs7152674	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7152842	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs7154787	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7154841	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7156313	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7156460	0.83[EUR][1000 genomes]
rs7157241	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs722633	0.86[EUR][1000 genomes]
rs725673	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs757850	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8003478	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8006300	0.96[CEU][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8008605	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8010616	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8013161	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8014349	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8017775	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323561	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72018000-72030000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72019000-72023200	Weak transcription	HSMM	muscle
3	chr14:72019400-72023800	Enhancers	Primary B cells from peripheral blood	blood
4	chr14:72019600-72024400	Enhancers	Fetal Intestine Large	intestine
5	chr14:72020000-72024000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:72020800-72023400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr14:72021000-72024400	Enhancers	Fetal Intestine Small	intestine
8	chr14:72021200-72023400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr14:72021200-72023400	Flanking Active TSS	Dnd41	blood
10	chr14:72021200-72023800	Enhancers	Hela-S3	cervix
11	chr14:72021800-72023200	Enhancers	NHDF-Ad	bronchial
12	chr14:72021800-72023600	Enhancers	HepG2	liver
13	chr14:72021800-72023800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr14:72021800-72023800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr14:72021800-72023800	Enhancers	Fetal Thymus	thymus
16	chr14:72021800-72023800	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr14:72021800-72023800	Enhancers	Small Intestine	intestine
18	chr14:72021800-72023800	Enhancers	K562	blood
19	chr14:72022000-72023600	Enhancers	Colonic Mucosa	Colon
20	chr14:72022000-72024400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr14:72022200-72024400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:72022200-72024400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr14:72022400-72023200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:72022400-72023200	Enhancers	Lung	lung
25	chr14:72022400-72023200	Enhancers	NHEK	skin
26	chr14:72022400-72023400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr14:72022400-72023600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:72022400-72023800	Enhancers	Primary T cells fromperipheralblood	blood
29	chr14:72022400-72024600	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr14:72022400-72024800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr14:72022600-72023200	Enhancers	Liver	Liver
32	chr14:72022600-72023200	Flanking Active TSS	GM12878-XiMat	blood
33	chr14:72022600-72023400	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr14:72022600-72023600	Enhancers	Primary hematopoietic stem cells	blood
35	chr14:72022600-72023800	Enhancers	Spleen	Spleen
36	chr14:72022600-72024000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr14:72022600-72024200	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr14:72022600-72024400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr14:72022600-72024400	Enhancers	Thymus	Thymus
40	chr14:72022600-72024800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:72022600-72040200	Weak transcription	Osteobl	bone
42	chr14:72022800-72023200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr14:72022800-72023200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr14:72022800-72023200	Enhancers	Brain Hippocampus Middle	brain
45	chr14:72022800-72023200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr14:72022800-72023400	Enhancers	Brain Substantia Nigra	brain
47	chr14:72022800-72023400	Enhancers	Fetal Heart	heart
48	chr14:72022800-72023800	Enhancers	Duodenum Mucosa	Duodenum
49	chr14:72022800-72023800	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr14:72022800-72024600	Enhancers	Primary T killer memory cells from peripheral blood	blood

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