Variant report

Variant	rs10135680
Chromosome Location	chr14:72030809-72030810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72030442..72031945-chr14:72036768..72039737,2	K562	blood:

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs10133626	1.00[JPT][hapmap]
rs10138557	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10139519	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1029570	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10483836	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10873246	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11848785	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1204995	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1204996	1.00[JPT][hapmap]
rs12127	0.80[EUR][1000 genomes]
rs12433040	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12878989	1.00[JPT][hapmap]
rs12879243	0.88[EUR][1000 genomes]
rs12880188	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12880291	0.80[EUR][1000 genomes]
rs12880611	0.88[EUR][1000 genomes]
rs12881643	0.86[EUR][1000 genomes]
rs12881957	0.86[EUR][1000 genomes]
rs12885344	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12887261	0.80[EUR][1000 genomes]
rs12889866	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs12892512	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12894016	0.88[EUR][1000 genomes]
rs12894478	0.84[EUR][1000 genomes]
rs12896900	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12896986	0.88[EUR][1000 genomes]
rs14030	0.80[EUR][1000 genomes]
rs17178206	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs17178234	0.88[EUR][1000 genomes]
rs17178387	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17767446	0.85[EUR][1000 genomes]
rs17767499	0.86[EUR][1000 genomes]
rs17767523	0.88[EUR][1000 genomes]
rs17767553	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs17767680	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17767686	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1859643	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1981588	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2108049	0.88[EUR][1000 genomes]
rs2108057	0.84[CEU][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2108707	0.83[EUR][1000 genomes]
rs2109276	0.88[EUR][1000 genomes]
rs2190240	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214836	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286136	1.00[JPT][hapmap]
rs2332638	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332640	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2332641	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2877729	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs28859432	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33994051	0.88[EUR][1000 genomes]
rs34011442	0.82[EUR][1000 genomes]
rs34057981	0.81[EUR][1000 genomes]
rs34169215	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34176710	0.87[EUR][1000 genomes]
rs34281934	0.87[EUR][1000 genomes]
rs34320622	0.88[EUR][1000 genomes]
rs34347034	0.88[EUR][1000 genomes]
rs34388001	0.80[EUR][1000 genomes]
rs34454371	0.88[EUR][1000 genomes]
rs34469007	0.88[EUR][1000 genomes]
rs34480562	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34524083	0.85[EUR][1000 genomes]
rs34528131	0.85[EUR][1000 genomes]
rs34748537	0.85[EUR][1000 genomes]
rs34873919	0.80[EUR][1000 genomes]
rs34993988	0.86[EUR][1000 genomes]
rs35051046	0.86[EUR][1000 genomes]
rs35122644	0.82[EUR][1000 genomes]
rs35231795	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35260692	0.85[EUR][1000 genomes]
rs35415083	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35468256	0.86[EUR][1000 genomes]
rs35589413	0.86[EUR][1000 genomes]
rs35609708	0.81[EUR][1000 genomes]
rs35613269	0.88[EUR][1000 genomes]
rs35620527	0.80[EUR][1000 genomes]
rs35621718	0.82[EUR][1000 genomes]
rs35680546	0.87[EUR][1000 genomes]
rs35760654	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35854505	0.86[EUR][1000 genomes]
rs35866366	0.80[EUR][1000 genomes]
rs35971049	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36052007	0.87[EUR][1000 genomes]
rs36072220	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36093218	0.87[EUR][1000 genomes]
rs3784062	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3784064	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3784066	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3825719	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4140797	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4319698	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4899398	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902938	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902941	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902942	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55883127	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56180634	0.84[EUR][1000 genomes]
rs56407721	0.86[EUR][1000 genomes]
rs61989367	0.88[EUR][1000 genomes]
rs61989373	0.88[EUR][1000 genomes]
rs61989374	0.88[EUR][1000 genomes]
rs61989377	0.88[EUR][1000 genomes]
rs61989379	0.80[EUR][1000 genomes]
rs61989382	0.87[EUR][1000 genomes]
rs61989383	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61989386	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61989417	0.93[AFR][1000 genomes]
rs61991247	0.85[EUR][1000 genomes]
rs61991248	0.85[EUR][1000 genomes]
rs61991250	0.85[EUR][1000 genomes]
rs61991254	0.85[EUR][1000 genomes]
rs61991255	0.88[EUR][1000 genomes]
rs6574015	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66645707	0.87[EUR][1000 genomes]
rs67489015	0.86[EUR][1000 genomes]
rs7140501	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142343	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144299	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7144829	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7145755	0.86[EUR][1000 genomes]
rs7147434	0.84[EUR][1000 genomes]
rs7147668	0.85[EUR][1000 genomes]
rs7148679	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7152674	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7152842	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs7154787	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7154841	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7156313	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7156460	0.85[EUR][1000 genomes]
rs7157241	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs722633	0.88[EUR][1000 genomes]
rs725673	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs757850	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8003478	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8006300	0.87[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8008605	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8010616	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8013161	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8014349	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8017775	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323561	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672060	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72022600-72040200	Weak transcription	Osteobl	bone
2	chr14:72023400-72041000	Weak transcription	HSMM	muscle
3	chr14:72023800-72033200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:72024200-72032400	Weak transcription	Primary B cells from cord blood	blood
5	chr14:72024400-72033000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:72024400-72033200	Weak transcription	Thymus	Thymus
7	chr14:72024400-72052400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:72024800-72032000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr14:72025400-72033000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr14:72027600-72033000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr14:72027800-72032800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr14:72030200-72031000	Enhancers	HMEC	breast
13	chr14:72030200-72031000	Enhancers	NHEK	skin
14	chr14:72030400-72031000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:72030400-72031000	Flanking Active TSS	GM12878-XiMat	blood
16	chr14:72030400-72041000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr14:72030600-72033000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr14:72030600-72040000	Weak transcription	Dnd41	blood
19	chr14:72030600-72048800	Weak transcription	Fetal Kidney	kidney
20	chr14:72030800-72032200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr14:72030800-72032800	Weak transcription	Brain Anterior Caudate	brain
22	chr14:72030800-72033000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:72030800-72033600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:72030800-72040000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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