Variant report

Variant	rs4902941
Chromosome Location	chr14:72099964-72099965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:72098961..72100634-chr14:72106164..72107861,2	MCF-7	breast:
2	chr14:72098733..72100419-chr14:72103335..72105411,2	K562	blood:
3	chr14:72097989..72100709-chr14:72101548..72105731,3	MCF-7	breast:

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10135680	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10138557	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10139519	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1029570	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10483836	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10873246	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11848785	0.89[EUR][1000 genomes]
rs12433040	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12879243	0.87[EUR][1000 genomes]
rs12880188	0.92[EUR][1000 genomes]
rs12880611	0.88[EUR][1000 genomes]
rs12881957	0.85[EUR][1000 genomes]
rs12885344	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12889866	0.88[EUR][1000 genomes]
rs12892512	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12894016	0.87[EUR][1000 genomes]
rs12896900	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12896986	0.88[EUR][1000 genomes]
rs17178206	0.88[EUR][1000 genomes]
rs17178234	0.88[EUR][1000 genomes]
rs17178387	0.86[EUR][1000 genomes]
rs17767499	0.85[EUR][1000 genomes]
rs17767523	0.88[EUR][1000 genomes]
rs17767553	0.88[EUR][1000 genomes]
rs17767680	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17767686	0.92[EUR][1000 genomes]
rs1859643	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1981588	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2108049	0.88[EUR][1000 genomes]
rs2108057	0.87[EUR][1000 genomes]
rs2109276	0.88[EUR][1000 genomes]
rs2190240	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2214836	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2332638	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2332640	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2332641	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2877729	0.87[EUR][1000 genomes]
rs28859432	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs33994051	0.88[EUR][1000 genomes]
rs34169215	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34176710	0.86[EUR][1000 genomes]
rs34281934	0.86[EUR][1000 genomes]
rs34320622	0.88[EUR][1000 genomes]
rs34347034	0.87[EUR][1000 genomes]
rs34454371	0.87[EUR][1000 genomes]
rs34469007	0.88[EUR][1000 genomes]
rs34480562	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34524083	0.84[EUR][1000 genomes]
rs34528131	0.84[EUR][1000 genomes]
rs34993988	0.85[EUR][1000 genomes]
rs35231795	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35415083	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35589413	0.86[EUR][1000 genomes]
rs35613269	0.88[EUR][1000 genomes]
rs35680546	0.86[EUR][1000 genomes]
rs35760654	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35971049	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36052007	0.86[EUR][1000 genomes]
rs36072220	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs36093218	0.86[EUR][1000 genomes]
rs3784062	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3784064	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3784066	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs3825719	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4140797	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4319698	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4899398	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902938	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4902942	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55883127	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs56180634	0.83[EUR][1000 genomes]
rs56407721	0.85[EUR][1000 genomes]
rs61989367	0.88[EUR][1000 genomes]
rs61989373	0.88[EUR][1000 genomes]
rs61989374	0.88[EUR][1000 genomes]
rs61989377	0.87[EUR][1000 genomes]
rs61989382	0.86[EUR][1000 genomes]
rs61989383	0.92[EUR][1000 genomes]
rs61989386	0.86[EUR][1000 genomes]
rs61989417	0.86[AFR][1000 genomes]
rs61991247	0.84[EUR][1000 genomes]
rs61991248	0.84[EUR][1000 genomes]
rs61991250	0.84[EUR][1000 genomes]
rs61991254	0.84[EUR][1000 genomes]
rs61991255	0.88[EUR][1000 genomes]
rs6574015	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6574016	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66645707	0.86[EUR][1000 genomes]
rs67489015	0.85[EUR][1000 genomes]
rs7140501	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7142343	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7144299	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7144829	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7147668	0.84[EUR][1000 genomes]
rs7148679	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7152674	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7154787	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7154841	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7156313	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7156460	0.84[EUR][1000 genomes]
rs7157241	0.92[EUR][1000 genomes]
rs722633	0.88[EUR][1000 genomes]
rs725673	0.88[EUR][1000 genomes]
rs757850	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8003478	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8006300	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8008605	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8010616	0.92[EUR][1000 genomes]
rs8013161	0.89[EUR][1000 genomes]
rs8014349	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8017775	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9323561	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9672060	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72072600-72103600	Weak transcription	Left Ventricle	heart
2	chr14:72073200-72137800	Weak transcription	Esophagus	oesophagus
3	chr14:72073400-72111000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:72075200-72106800	Weak transcription	Brain Hippocampus Middle	brain
5	chr14:72078600-72100000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr14:72082600-72125000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr14:72083000-72111000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:72083400-72101600	Weak transcription	Fetal Stomach	stomach
9	chr14:72083600-72118000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr14:72083600-72128200	Weak transcription	Spleen	Spleen
11	chr14:72083800-72100400	Weak transcription	Fetal Thymus	thymus
12	chr14:72083800-72105200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:72083800-72109800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:72084000-72111800	Weak transcription	Thymus	Thymus
15	chr14:72084600-72101400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr14:72087400-72113400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr14:72088200-72108800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr14:72088200-72159600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr14:72088400-72100800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:72088400-72103600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:72088600-72105200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:72090000-72124200	Weak transcription	Hela-S3	cervix
23	chr14:72091000-72107200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:72091000-72114000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr14:72091000-72117000	Weak transcription	Liver	Liver
26	chr14:72091000-72127400	Weak transcription	Pancreas	Pancrea
27	chr14:72091200-72105400	Weak transcription	Primary T cells from cord blood	blood
28	chr14:72091200-72109000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr14:72091200-72109600	Weak transcription	Brain Anterior Caudate	brain
30	chr14:72091200-72115200	Weak transcription	HepG2	liver
31	chr14:72091600-72100200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr14:72091600-72102600	Weak transcription	HSMM	muscle
33	chr14:72091600-72103000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr14:72091600-72108800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr14:72091600-72109600	Weak transcription	HSMMtube	muscle
36	chr14:72091600-72116800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr14:72091600-72117000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr14:72091600-72117200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr14:72091800-72100000	Weak transcription	Fetal Intestine Large	intestine
40	chr14:72092200-72101600	Weak transcription	Adipose Nuclei	Adipose
41	chr14:72092400-72100000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr14:72092400-72105200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr14:72093200-72104800	Weak transcription	NHEK	skin
44	chr14:72093400-72109000	Weak transcription	Fetal Lung	lung
45	chr14:72095000-72100000	Strong transcription	Dnd41	blood
46	chr14:72095600-72103200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr14:72096400-72104600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr14:72096600-72100200	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr14:72097200-72100800	Weak transcription	NH-A	brain
50	chr14:72097200-72102400	Weak transcription	HUVEC	blood vessel

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