Variant report

Variant	rs17767553
Chromosome Location	chr14:71910587-71910588
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:71910560-71910710	GM12867	blood:	n/a	n/a
2	EBF1	chr14:71910397-71910693	GM12878	blood:	n/a	n/a
3	RAD21	chr14:71910402-71910639	GM12878	blood:	n/a	n/a
4	CTCF	chr14:71910539-71910629	GM12891	blood:	n/a	n/a
5	RAD21	chr14:71910397-71910739	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTCF	chr14:71910500-71910650	WERI-Rb-1	eye:	n/a	n/a
7	CTCF	chr14:71910520-71910670	GM12869	blood:	n/a	n/a
8	CTCF	chr14:71910444-71910667	K562	blood:	n/a	n/a
9	CTCF	chr14:71910552-71910637	GM10266	blood:	n/a	n/a
10	CTCF	chr14:71910440-71910590	GM12872	blood:	n/a	n/a
11	CTCF	chr14:71910540-71910690	GM06990	blood:	n/a	n/a
12	CTCF	chr14:71910507-71910653	GM19238	blood:	n/a	n/a
13	EBF1	chr14:71910374-71911741	GM12878	blood:	n/a	chr14:71911380-71911393 chr14:71911381-71911392 chr14:71911382-71911391
14	CTCF	chr14:71910440-71910590	GM12878	blood:	n/a	n/a
15	CTCF	chr14:71910559-71910594	GM19239	blood:	n/a	n/a
16	CTCF	chr14:71910426-71910729	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
RN7SL683P	TF binding region

Extended variants
information (count: 191 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:190)

rs_ID	r²[population]
rs10135680	0.88[EUR][1000 genomes]
rs10138557	0.87[EUR][1000 genomes]
rs10139519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs1029570	0.87[EUR][1000 genomes]
rs10483836	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10873246	0.86[AFR][1000 genomes]
rs11627918	0.81[CHD][hapmap]
rs11845249	0.81[CHD][hapmap]
rs11848785	0.82[EUR][1000 genomes]
rs12127	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12433040	0.90[EUR][1000 genomes]
rs12878989	0.86[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12879243	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12880188	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12880291	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12880611	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12881643	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12881957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884929	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12885344	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12887261	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12889866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12891975	0.86[EUR][1000 genomes]
rs12892512	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12894016	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12894478	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12896900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12896986	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14030	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17178045	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17178206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17178234	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17178387	0.84[EUR][1000 genomes]
rs17767380	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17767392	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17767398	0.87[CEU][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs17767410	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17767446	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17767499	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17767523	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17767680	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17767686	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1859643	0.87[EUR][1000 genomes]
rs1981588	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs1990241	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2108049	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2108057	0.91[CEU][hapmap]
rs2108706	0.91[CEU][hapmap]
rs2108707	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2109276	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190240	0.87[EUR][1000 genomes]
rs2214836	0.90[EUR][1000 genomes]
rs2332638	0.90[EUR][1000 genomes]
rs2332640	0.87[EUR][1000 genomes]
rs2332641	0.88[EUR][1000 genomes]
rs2877729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28859432	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs33994051	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34011442	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34057981	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34061264	0.86[EUR][1000 genomes]
rs34169215	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34176710	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34281405	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34281934	0.84[EUR][1000 genomes]
rs34320622	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34347034	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34388001	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34454371	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34469007	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34480562	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34524083	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34528013	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34528131	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34533948	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34649709	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34674149	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34725136	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34746156	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34748537	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34767050	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34873919	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34911660	0.82[EUR][1000 genomes]
rs34957192	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34991781	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34993988	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35051046	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35054229	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35094946	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35122644	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35151594	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35231795	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35260692	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35415083	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35468256	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35589413	0.84[EUR][1000 genomes]
rs35609708	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35613269	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35620527	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35621718	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35625243	0.90[EUR][1000 genomes]
rs35680546	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35692397	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35760654	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35796129	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35822724	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35831373	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35854505	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35866366	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35971049	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36052007	0.84[EUR][1000 genomes]
rs36057816	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36072220	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36093218	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784062	0.89[EUR][1000 genomes]
rs3784064	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs3784066	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3825719	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs4453405	0.82[EUR][1000 genomes]
rs4899394	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs4899398	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs4902938	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4902941	0.88[EUR][1000 genomes]
rs55883127	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56180634	0.82[EUR][1000 genomes]
rs56363446	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56407721	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989367	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989373	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989374	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989377	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989379	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61989382	0.84[EUR][1000 genomes]
rs61989383	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61989386	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61991195	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61991199	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61991200	0.82[EUR][1000 genomes]
rs61991201	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61991202	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61991203	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61991204	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61991205	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61991213	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61991243	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61991246	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61991247	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61991248	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61991249	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61991250	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61991254	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61991255	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574015	0.88[EUR][1000 genomes]
rs6574016	0.90[EUR][1000 genomes]
rs66645707	0.84[EUR][1000 genomes]
rs67489015	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68073803	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7140354	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7140501	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs7142180	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7142214	0.83[EUR][1000 genomes]
rs7142343	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs7144299	0.90[EUR][1000 genomes]
rs7144829	0.90[EUR][1000 genomes]
rs7145755	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147434	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7147668	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152674	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7152842	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7154841	0.90[EUR][1000 genomes]
rs7156313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs7156460	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157241	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs722633	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723966	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs725673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728427	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs757850	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8003478	0.82[EUR][1000 genomes]
rs8006300	0.91[CEU][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs8007068	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8008605	0.90[EUR][1000 genomes]
rs8010616	0.86[EUR][1000 genomes]
rs8013161	0.82[EUR][1000 genomes]
rs8014349	0.90[EUR][1000 genomes]
rs8015644	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8017775	0.87[EUR][1000 genomes]
rs8019721	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9323561	0.90[EUR][1000 genomes]
rs9672060	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs17767553	PCNX	cis	cerebellum	SCAN
rs17767553	PCNX	cis	parietal	SCAN
rs17767553	SMOC1	cis	cerebellum	SCAN
rs17767553	SIPA1L1	cis	cerebellum	SCAN
rs17767553	COQ6	cis	parietal	SCAN

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71885800-71915400	Weak transcription	Pancreas	Pancrea
2	chr14:71900000-71927200	Weak transcription	Primary B cells from cord blood	blood
3	chr14:71900200-71915800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:71900400-71915400	Weak transcription	Gastric	stomach
5	chr14:71901400-71915800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:71905200-71911000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:71905600-71919200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr14:71905800-71910600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:71905800-71912600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr14:71905800-71915400	Weak transcription	Small Intestine	intestine
11	chr14:71906000-71910600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr14:71906000-71910800	Weak transcription	Ovary	ovary
13	chr14:71906000-71910800	Weak transcription	Spleen	Spleen
14	chr14:71906200-71910600	Weak transcription	Brain Substantia Nigra	brain
15	chr14:71906400-71927000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr14:71906600-71912600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:71906800-71911400	Weak transcription	Fetal Lung	lung
18	chr14:71907000-71912600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr14:71907000-71918800	Weak transcription	HMEC	breast
20	chr14:71907000-71930000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:71907000-71930600	Weak transcription	HSMM	muscle
22	chr14:71907200-71911000	Weak transcription	Osteobl	bone
23	chr14:71907200-71915200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:71907200-71915400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:71907200-71921400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:71907400-71915000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:71907400-71921400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:71907600-71912200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr14:71908200-71910800	Weak transcription	Brain Anterior Caudate	brain
30	chr14:71908200-71910800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr14:71908200-71935400	Weak transcription	Primary T cells from cord blood	blood
32	chr14:71908400-71911400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:71908400-71911400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:71908400-71911400	Weak transcription	NHDF-Ad	bronchial
35	chr14:71908400-71912600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr14:71908400-71915800	Weak transcription	Colon Smooth Muscle	Colon
37	chr14:71908600-71913000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:71908800-71911200	Weak transcription	Aorta	Aorta
39	chr14:71909800-71911400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr14:71909800-71913400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr14:71910200-71912800	Enhancers	Adipose Nuclei	Adipose
42	chr14:71910400-71911600	Enhancers	Brain Hippocampus Middle	brain
43	chr14:71910400-71912200	Enhancers	Fetal Heart	heart
44	chr14:71910400-71914200	Enhancers	GM12878-XiMat	blood

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