Variant report

Variant	rs74060338
Chromosome Location	chr14:71734435-71734436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151998303..152000885-chr14:71732498..71734961,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17109220	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2286409	0.85[ASN][1000 genomes]
rs35151594	0.85[ASN][1000 genomes]
rs3742844	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74060335	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74060336	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323558	0.89[EUR][1000 genomes]
rs976044	0.80[ASN][1000 genomes]
rs976147	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71733600-71734600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr14:71733800-71734600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:71733800-71734600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:71733800-71734600	Enhancers	Primary B cells from peripheral blood	blood
5	chr14:71733800-71734600	Enhancers	Stomach Mucosa	stomach
6	chr14:71733800-71734600	Enhancers	NHEK	skin
7	chr14:71733800-71734800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr14:71733800-71734800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr14:71734000-71734600	Active TSS	Duodenum Mucosa	Duodenum
10	chr14:71734000-71734600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr14:71734000-71734600	Enhancers	GM12878-XiMat	blood
12	chr14:71734000-71734600	Flanking Active TSS	Hela-S3	cervix
13	chr14:71734000-71734600	Flanking Active TSS	Osteobl	bone
14	chr14:71734000-71734800	Active TSS	Primary T cells fromperipheralblood	blood
15	chr14:71734000-71734800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:71734200-71734600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:71734200-71734600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:71734200-71734600	Flanking Active TSS	HMEC	breast
19	chr14:71734200-71734800	Active TSS	A549	lung
20	chr14:71734200-71734800	Enhancers	Dnd41	blood
21	chr14:71734200-71734800	Active TSS	NHDF-Ad	bronchial
22	chr14:71734400-71734600	Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr14:71734400-71734600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr14:71734400-71734600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
25	chr14:71734400-71734600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
26	chr14:71734400-71734600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
27	chr14:71734400-71734600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr14:71734400-71734800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:71734400-71734800	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr14:71734400-71734800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr14:71734400-71734800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr14:71734400-71734800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr14:71734400-71734800	Active TSS	Adipose Nuclei	Adipose
34	chr14:71734400-71734800	Active TSS	Liver	Liver
35	chr14:71734400-71734800	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr14:71734400-71734800	Active TSS	Stomach Smooth Muscle	stomach
37	chr14:71734400-71735200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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