Variant report

Variant	rs2332386
Chromosome Location	chr14:70915508-70915509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr14:70915269-70915832	MCF-7	breast:	n/a	n/a
2	FOXA1	chr14:70915297-70915786	HepG2	liver:	n/a	n/a
3	FOXA2	chr14:70915467-70915831	A549	lung:	n/a	n/a
4	CEBPB	chr14:70915286-70915759	HepG2	liver:	n/a	chr14:70915562-70915575 chr14:70915563-70915574
5	NFIC	chr14:70915181-70915760	HepG2	liver:	n/a	n/a
6	TEAD4	chr14:70915303-70915790	HepG2	liver:	n/a	n/a
7	ARID3A	chr14:70915259-70915742	HepG2	liver:	n/a	n/a
8	HDAC2	chr14:70915338-70915741	HepG2	liver:	n/a	n/a
9	CEBPB	chr14:70915346-70915730	IMR90	lung:	n/a	chr14:70915562-70915575 chr14:70915563-70915574
10	CEBPB	chr14:70915388-70915740	A549	lung:	n/a	chr14:70915562-70915575 chr14:70915563-70915574
11	FOS	chr14:70915479-70915559	MCF10A-Er-Src	breast:	n/a	n/a
12	MYC	chr14:70915496-70915623	MCF10A-Er-Src	breast:	n/a	n/a
13	CEBPB	chr14:70915418-70915693	HepG2	liver:	n/a	chr14:70915562-70915575 chr14:70915563-70915574
14	NFIC	chr14:70915264-70915727	HepG2	liver:	n/a	n/a
15	RXRA	chr14:70915381-70915738	HepG2	liver:	n/a	n/a
16	CEBPB	chr14:70915310-70915785	HepG2	liver:	n/a	chr14:70915562-70915575 chr14:70915563-70915574
17	FOXA1	chr14:70915196-70915877	HepG2	liver:	n/a	n/a
18	CEBPD	chr14:70915429-70915717	HepG2	liver:	n/a	n/a
19	STAT3	chr14:70915421-70915532	MCF10A-Er-Src	breast:	n/a	n/a
20	RFX5	chr14:70915384-70915682	HepG2	liver:	n/a	chr14:70915416-70915431
21	FOXA1	chr14:70915287-70915770	HepG2	liver:	n/a	n/a
22	CEBPB	chr14:70915391-70915705	A549	lung:	n/a	chr14:70915562-70915575 chr14:70915563-70915574
23	RCOR1	chr14:70915416-70915721	HepG2	liver:	n/a	n/a
24	MYBL2	chr14:70915172-70915823	HepG2	liver:	n/a	n/a
25	CEBPB	chr14:70915420-70915715	Hela-S3	cervix:	n/a	chr14:70915562-70915575 chr14:70915563-70915574
26	CEBPB	chr14:70915317-70915771	HepG2	liver:	n/a	chr14:70915562-70915575 chr14:70915563-70915574
27	SMC3	chr14:70915374-70915715	HepG2	liver:	n/a	n/a
28	SP1	chr14:70915301-70915765	HepG2	liver:	n/a	n/a
29	SETDB1	chr14:70915459-70915857	U2OS	brain:	n/a	n/a
30	EP300	chr14:70915382-70915725	HepG2	liver:	n/a	n/a
31	JUND	chr14:70915381-70915689	HepG2	liver:	n/a	n/a
32	FOXA2	chr14:70915314-70915797	HepG2	liver:	n/a	n/a
33	EP300	chr14:70915247-70915740	HepG2	liver:	n/a	n/a
34	HNF4G	chr14:70915360-70915716	HepG2	liver:	n/a	n/a
35	EP300	chr14:70915325-70915752	HepG2	liver:	n/a	n/a
36	HNF4A	chr14:70915402-70915704	HepG2	liver:	n/a	n/a
37	FOXA2	chr14:70915432-70915798	A549	lung:	n/a	n/a
38	CEBPB	chr14:70915405-70915810	MCF-7	breast:	n/a	chr14:70915562-70915575 chr14:70915563-70915574
39	FOXA1	chr14:70915341-70915837	HepG2	liver:	n/a	n/a
40	CEBPB	chr14:70915317-70915808	MCF-7	breast:	n/a	chr14:70915562-70915575 chr14:70915563-70915574

Variant related genes	Relation type
ADAM21	TF binding region

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10134376	1.00[YRI][hapmap]
rs10140161	1.00[YRI][hapmap]
rs10140916	1.00[YRI][hapmap]
rs10140938	1.00[YRI][hapmap]
rs10141034	1.00[YRI][hapmap]
rs10142875	1.00[YRI][hapmap]
rs10146573	1.00[YRI][hapmap]
rs10150618	1.00[YRI][hapmap]
rs10151236	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11158856	1.00[YRI][hapmap]
rs11621219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12431557	1.00[YRI][hapmap]
rs12433437	1.00[YRI][hapmap]
rs12434063	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12588332	0.91[YRI][hapmap]
rs2095806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2275297	1.00[YRI][hapmap]
rs2275298	1.00[YRI][hapmap]
rs2332375	1.00[YRI][hapmap]
rs2332376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2332383	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2332385	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2332419	1.00[YRI][hapmap]
rs2332420	1.00[YRI][hapmap]
rs2877660	1.00[YRI][hapmap]
rs3784155	0.87[YRI][hapmap]
rs4600398	0.87[YRI][hapmap]
rs55865251	1.00[EUR][1000 genomes]
rs56698163	1.00[EUR][1000 genomes]
rs57082239	1.00[EUR][1000 genomes]
rs57486211	1.00[EUR][1000 genomes]
rs57957300	1.00[EUR][1000 genomes]
rs58669540	1.00[EUR][1000 genomes]
rs59242599	1.00[EUR][1000 genomes]
rs59853961	1.00[EUR][1000 genomes]
rs60598858	1.00[EUR][1000 genomes]
rs6420899	1.00[YRI][hapmap]
rs6573950	1.00[YRI][hapmap]
rs6573951	1.00[YRI][hapmap]
rs6573952	1.00[YRI][hapmap]
rs6573954	1.00[YRI][hapmap]
rs6573956	1.00[YRI][hapmap]
rs6573957	1.00[YRI][hapmap]
rs6573958	1.00[YRI][hapmap]
rs6573960	1.00[YRI][hapmap]
rs7144255	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144371	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7145450	1.00[YRI][hapmap]
rs7148128	0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7149261	1.00[YRI][hapmap]
rs7150558	1.00[YRI][hapmap]
rs7155162	1.00[YRI][hapmap]
rs7155332	1.00[YRI][hapmap]
rs7155763	1.00[YRI][hapmap]
rs7157399	0.89[YRI][hapmap]
rs7157430	1.00[YRI][hapmap]
rs7158117	1.00[YRI][hapmap]
rs7160707	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282125	1.00[EUR][1000 genomes]
rs73282130	1.00[EUR][1000 genomes]
rs73282131	1.00[EUR][1000 genomes]
rs73282190	1.00[EUR][1000 genomes]
rs73282196	1.00[EUR][1000 genomes]
rs73283923	1.00[EUR][1000 genomes]
rs73283934	1.00[EUR][1000 genomes]
rs73283937	1.00[EUR][1000 genomes]
rs73283977	1.00[EUR][1000 genomes]
rs73283980	1.00[EUR][1000 genomes]
rs73283997	1.00[EUR][1000 genomes]
rs8007103	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs8013510	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015825	0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8016729	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020995	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9323537	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70908400-70915800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr14:70908800-70921600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr14:70910600-70955600	Weak transcription	Left Ventricle	heart
4	chr14:70913200-70921600	Weak transcription	Adipose Nuclei	Adipose
5	chr14:70913800-70921400	Weak transcription	Ovary	ovary
6	chr14:70914400-70918000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:70915000-70916400	Enhancers	HepG2	liver
8	chr14:70915200-70915600	Enhancers	Fetal Heart	heart
9	chr14:70915200-70915800	Enhancers	Liver	Liver
10	chr14:70915400-70916000	Enhancers	Small Intestine	intestine
11	chr14:70915400-70916600	Enhancers	Psoas Muscle	Psoas

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