Variant report

Variant	rs59853961
Chromosome Location	chr14:71068780-71068781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr14:71068773-71069548	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:71053126..71055843-chr14:71067418..71069043,2	K562	blood:
2	chr14:71063881..71065934-chr14:71068184..71070871,2	K562	blood:
3	chr14:70232810..70235786-chr14:71065753..71068797,4	MCF-7	breast:
4	chr14:71068006..71069934-chr5:139842681..139845055,2	MCF-7	breast:
5	chr14:71067728..71070512-chr14:71142733..71145448,2	K562	blood:

No data

Variant related genes	Relation type
MED6	TF binding region
ENSG00000100650	Chromatin interaction
ENSG00000133997	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10151236	1.00[EUR][1000 genomes]
rs11621219	1.00[EUR][1000 genomes]
rs12434063	1.00[EUR][1000 genomes]
rs2095806	1.00[EUR][1000 genomes]
rs2332376	1.00[EUR][1000 genomes]
rs2332383	1.00[EUR][1000 genomes]
rs2332385	1.00[EUR][1000 genomes]
rs2332386	1.00[EUR][1000 genomes]
rs55865251	1.00[EUR][1000 genomes]
rs56698163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57082239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57486211	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57957300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58669540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59242599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60598858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144255	1.00[EUR][1000 genomes]
rs7148128	1.00[EUR][1000 genomes]
rs7160707	1.00[EUR][1000 genomes]
rs73282125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283937	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283977	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283980	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283997	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73286073	0.87[AFR][1000 genomes]
rs8013510	1.00[EUR][1000 genomes]
rs8015825	1.00[EUR][1000 genomes]
rs8016729	1.00[EUR][1000 genomes]
rs8020995	1.00[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71068000-71068800	Flanking Active TSS	GM12878-XiMat	blood
2	chr14:71068000-71069400	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:71068400-71078600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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