Variant report

Variant	rs73283997
Chromosome Location	chr14:71066711-71066712
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GABPA	chr14:71066685-71067608	A549	lung:	n/a	n/a
2	GABPA	chr14:71066409-71067878	MCF-7	breast:	n/a	n/a
3	HCFC1	chr14:71066618-71068483	Hela-S3	cervix:	n/a	n/a
4	MXI1	chr14:71066659-71068211	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr14:71066694-71066847	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71060891..71063654-chr14:71065972..71067588,2	MCF-7	breast:
2	chr14:70232810..70235786-chr14:71065753..71068797,4	MCF-7	breast:

Variant related genes	Relation type
MED6	TF binding region
ENSG00000100650	Chromatin interaction
ENSG00000258951	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10151236	1.00[EUR][1000 genomes]
rs11621219	1.00[EUR][1000 genomes]
rs12434063	1.00[EUR][1000 genomes]
rs2095806	1.00[EUR][1000 genomes]
rs2332376	1.00[EUR][1000 genomes]
rs2332383	1.00[EUR][1000 genomes]
rs2332385	1.00[EUR][1000 genomes]
rs2332386	1.00[EUR][1000 genomes]
rs55865251	1.00[EUR][1000 genomes]
rs56698163	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57082239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57486211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57957300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58669540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59242599	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59853961	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60598858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144255	1.00[EUR][1000 genomes]
rs7148128	1.00[EUR][1000 genomes]
rs7160707	1.00[EUR][1000 genomes]
rs73282125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73286073	0.82[AFR][1000 genomes]
rs8013510	1.00[EUR][1000 genomes]
rs8015825	1.00[EUR][1000 genomes]
rs8016729	1.00[EUR][1000 genomes]
rs8020995	1.00[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71051400-71066800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:71062600-71066800	Weak transcription	Pancreas	Pancrea
3	chr14:71063200-71066800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:71063200-71066800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:71065600-71066800	Flanking Active TSS	Dnd41	blood
6	chr14:71065600-71068400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:71065800-71067000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:71065800-71067000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:71066000-71066800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:71066000-71066800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr14:71066000-71066800	Flanking Active TSS	Fetal Brain Male	brain
12	chr14:71066000-71066800	Flanking Active TSS	Fetal Brain Female	brain
13	chr14:71066000-71066800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr14:71066000-71066800	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr14:71066000-71066800	Enhancers	Small Intestine	intestine
16	chr14:71066000-71066800	Enhancers	Stomach Mucosa	stomach
17	chr14:71066000-71067000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:71066000-71067000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr14:71066000-71067000	Flanking Active TSS	Liver	Liver
20	chr14:71066000-71067000	Flanking Active TSS	Brain Angular Gyrus	brain
21	chr14:71066000-71067000	Flanking Active TSS	Brain Germinal Matrix	brain
22	chr14:71066000-71067000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr14:71066000-71067000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
24	chr14:71066000-71067200	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr14:71066000-71068200	Active TSS	H1 Cell Line	embryonic stem cell
26	chr14:71066000-71068200	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr14:71066000-71068400	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr14:71066000-71068600	Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr14:71066200-71066800	Flanking Active TSS	Colon Smooth Muscle	Colon
30	chr14:71066200-71066800	Flanking Active TSS	Rectal Smooth Muscle	rectum
31	chr14:71066200-71066800	Active TSS	HepG2	liver
32	chr14:71066200-71067000	Flanking Active TSS	Primary T cells from cord blood	blood
33	chr14:71066200-71067000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr14:71066200-71067000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr14:71066200-71067000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
36	chr14:71066200-71067000	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr14:71066200-71067000	Flanking Active TSS	Duodenum Mucosa	Duodenum
38	chr14:71066200-71067000	Flanking Active TSS	Fetal Lung	lung
39	chr14:71066200-71067000	Flanking Active TSS	HUVEC	blood vessel
40	chr14:71066200-71067000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr14:71066200-71067200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
42	chr14:71066200-71068000	Active TSS	H9 Cell Line	embryonic stem cell
43	chr14:71066200-71068200	Active TSS	K562	blood
44	chr14:71066200-71068400	Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr14:71066400-71066800	Flanking Active TSS	Brain Cingulate Gyrus	brain
46	chr14:71066400-71066800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
47	chr14:71066400-71066800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr14:71066400-71067000	Flanking Active TSS	Primary B cells from cord blood	blood
49	chr14:71066400-71067000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr14:71066400-71067000	Flanking Active TSS	Fetal Muscle Leg	muscle

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