Variant report

Variant	rs2358278
Chromosome Location	chr10:19358322-19358323
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10508574	0.82[EUR][1000 genomes]
rs10740840	0.82[EUR][1000 genomes]
rs10826934	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10826935	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10826937	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10826949	0.86[EUR][1000 genomes]
rs10826950	0.86[EUR][1000 genomes]
rs12242151	0.83[EUR][1000 genomes]
rs2358276	0.86[EUR][1000 genomes]
rs2358280	0.86[EUR][1000 genomes]
rs2358281	0.86[EUR][1000 genomes]
rs2358282	0.86[EUR][1000 genomes]
rs2358284	0.86[EUR][1000 genomes]
rs2358285	0.82[EUR][1000 genomes]
rs2358286	0.84[EUR][1000 genomes]
rs2358288	0.84[EUR][1000 genomes]
rs2358289	0.85[EUR][1000 genomes]
rs2358293	0.84[EUR][1000 genomes]
rs2358297	0.83[EUR][1000 genomes]
rs2358298	0.82[EUR][1000 genomes]
rs2358299	0.82[EUR][1000 genomes]
rs2358300	0.83[EUR][1000 genomes]
rs2358301	0.82[EUR][1000 genomes]
rs2358302	0.82[EUR][1000 genomes]
rs2358305	0.82[EUR][1000 genomes]
rs2358311	0.87[EUR][1000 genomes]
rs2358312	0.86[EUR][1000 genomes]
rs2358314	0.86[EUR][1000 genomes]
rs2358315	0.84[EUR][1000 genomes]
rs2884422	0.84[EUR][1000 genomes]
rs3858196	0.84[EUR][1000 genomes]
rs4265498	0.82[EUR][1000 genomes]
rs4353174	0.81[EUR][1000 genomes]
rs4408229	0.86[EUR][1000 genomes]
rs4436459	0.84[EUR][1000 genomes]
rs4465279	0.84[EUR][1000 genomes]
rs4509661	0.84[EUR][1000 genomes]
rs4748547	0.84[EUR][1000 genomes]
rs4748549	0.82[EUR][1000 genomes]
rs4748552	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4748553	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6481736	0.85[EUR][1000 genomes]
rs6481737	0.85[EUR][1000 genomes]
rs7069990	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074918	0.84[EUR][1000 genomes]
rs7081765	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7088261	0.84[EUR][1000 genomes]
rs7090216	0.83[EUR][1000 genomes]
rs72788929	0.87[EUR][1000 genomes]
rs755176	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3493336	chr10:19216608-19378036	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3493337	chr10:19216667-19377987	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528472	chr10:19296750-19385248	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv947594	chr10:19342392-19376962	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19349600-19359000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:19353600-19359800	Weak transcription	Fetal Intestine Small	intestine
3	chr10:19357400-19360000	Weak transcription	Fetal Intestine Large	intestine

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