Variant report

Variant	rs2358312
Chromosome Location	chr10:19399593-19399594
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10159517	0.85[EUR][1000 genomes]
rs10218990	0.81[EUR][1000 genomes]
rs10740841	0.82[EUR][1000 genomes]
rs10826934	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10826935	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10826937	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10826946	0.82[EUR][1000 genomes]
rs10826949	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10826950	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10826951	0.85[EUR][1000 genomes]
rs10826956	0.83[EUR][1000 genomes]
rs2358278	0.86[EUR][1000 genomes]
rs2358306	0.82[EUR][1000 genomes]
rs2358307	0.82[EUR][1000 genomes]
rs2358310	0.81[EUR][1000 genomes]
rs2358311	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2358313	0.86[EUR][1000 genomes]
rs2358314	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2358315	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4748550	0.81[EUR][1000 genomes]
rs4748551	0.81[EUR][1000 genomes]
rs4748552	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4748553	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7069170	0.83[EUR][1000 genomes]
rs7085520	0.83[EUR][1000 genomes]
rs7092121	0.82[EUR][1000 genomes]
rs72788929	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8181341	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv894918	chr10:19390046-19466344	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19398000-19399600	Strong transcription	Fetal Intestine Large	intestine
2	chr10:19398600-19399800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr10:19398800-19401000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:19398800-19403200	Weak transcription	Fetal Intestine Small	intestine
5	chr10:19399000-19399800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:19399000-19400400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr10:19399000-19400600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:19399200-19400600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr10:19399400-19400800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:19399400-19403200	Weak transcription	Duodenum Mucosa	Duodenum

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