Variant report

Variant	rs10159517
Chromosome Location	chr10:19392857-19392858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10218990	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10508574	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10740840	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10740841	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10740842	0.83[EUR][1000 genomes]
rs10740843	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10763864	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10826934	0.81[EUR][1000 genomes]
rs10826935	0.82[EUR][1000 genomes]
rs10826937	0.81[EUR][1000 genomes]
rs10826946	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10826949	0.88[EUR][1000 genomes]
rs10826950	0.88[EUR][1000 genomes]
rs10826951	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826956	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12242151	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2358276	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2358279	0.92[ASN][1000 genomes]
rs2358280	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2358281	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2358282	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2358284	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2358285	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2358286	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2358288	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2358289	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2358293	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2358297	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2358298	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2358299	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2358300	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2358301	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2358302	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2358305	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2358306	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2358307	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2358310	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2358311	0.86[EUR][1000 genomes]
rs2358312	0.85[EUR][1000 genomes]
rs2358313	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2358314	0.85[EUR][1000 genomes]
rs2358315	0.85[EUR][1000 genomes]
rs2884422	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3858196	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4265498	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4353174	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4408229	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4436459	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4465279	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4509661	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4748547	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4748549	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4748550	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4748551	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4748552	0.82[EUR][1000 genomes]
rs4748553	0.82[EUR][1000 genomes]
rs6481736	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6481737	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7069170	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7074918	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7085520	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7088261	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7090216	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7092121	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72788929	0.86[EUR][1000 genomes]
rs755176	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8181341	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv894918	chr10:19390046-19466344	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19391400-19393600	Strong transcription	Fetal Intestine Large	intestine
2	chr10:19392600-19393200	Strong transcription	Duodenum Mucosa	Duodenum
3	chr10:19392600-19398000	Weak transcription	Fetal Intestine Small	intestine

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