Variant report

Variant	rs10826949
Chromosome Location	chr10:19392649-19392650
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10159517	0.88[EUR][1000 genomes]
rs10218990	0.84[EUR][1000 genomes]
rs10508574	0.81[EUR][1000 genomes]
rs10740840	0.80[EUR][1000 genomes]
rs10740841	0.85[EUR][1000 genomes]
rs10826934	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10826935	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10826937	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10826946	0.85[EUR][1000 genomes]
rs10826950	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10826951	0.88[EUR][1000 genomes]
rs10826956	0.84[EUR][1000 genomes]
rs2358278	0.86[EUR][1000 genomes]
rs2358298	0.81[EUR][1000 genomes]
rs2358299	0.81[EUR][1000 genomes]
rs2358300	0.81[EUR][1000 genomes]
rs2358301	0.81[EUR][1000 genomes]
rs2358302	0.81[EUR][1000 genomes]
rs2358305	0.81[EUR][1000 genomes]
rs2358306	0.85[EUR][1000 genomes]
rs2358307	0.85[EUR][1000 genomes]
rs2358310	0.83[EUR][1000 genomes]
rs2358311	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2358312	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2358313	0.87[EUR][1000 genomes]
rs2358314	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2358315	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4265498	0.81[EUR][1000 genomes]
rs4353174	0.80[EUR][1000 genomes]
rs4748549	0.81[EUR][1000 genomes]
rs4748550	0.84[EUR][1000 genomes]
rs4748551	0.84[EUR][1000 genomes]
rs4748552	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4748553	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7069170	0.86[EUR][1000 genomes]
rs7085520	0.86[EUR][1000 genomes]
rs7092121	0.85[EUR][1000 genomes]
rs72788929	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs755176	0.81[EUR][1000 genomes]
rs8181341	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv894918	chr10:19390046-19466344	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19391400-19393600	Strong transcription	Fetal Intestine Large	intestine
2	chr10:19392600-19393200	Strong transcription	Duodenum Mucosa	Duodenum
3	chr10:19392600-19398000	Weak transcription	Fetal Intestine Small	intestine

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