Variant report

Variant	rs10826937
Chromosome Location	chr10:19384726-19384727
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10159517	0.81[EUR][1000 genomes]
rs10218990	0.85[EUR][1000 genomes]
rs10508574	0.82[EUR][1000 genomes]
rs10740840	0.81[EUR][1000 genomes]
rs10740841	0.84[EUR][1000 genomes]
rs10826934	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10826935	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10826946	0.84[EUR][1000 genomes]
rs10826949	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10826950	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10826951	0.81[EUR][1000 genomes]
rs2358278	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2358297	0.83[EUR][1000 genomes]
rs2358298	0.82[EUR][1000 genomes]
rs2358299	0.82[EUR][1000 genomes]
rs2358300	0.82[EUR][1000 genomes]
rs2358301	0.82[EUR][1000 genomes]
rs2358302	0.82[EUR][1000 genomes]
rs2358305	0.82[EUR][1000 genomes]
rs2358306	0.84[EUR][1000 genomes]
rs2358307	0.84[EUR][1000 genomes]
rs2358310	0.82[EUR][1000 genomes]
rs2358311	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2358312	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2358313	0.81[EUR][1000 genomes]
rs2358314	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2358315	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4265498	0.82[EUR][1000 genomes]
rs4353174	0.81[EUR][1000 genomes]
rs4748549	0.82[EUR][1000 genomes]
rs4748550	0.85[EUR][1000 genomes]
rs4748551	0.85[EUR][1000 genomes]
rs4748552	0.97[AFR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4748553	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7069170	0.83[EUR][1000 genomes]
rs7069990	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7085520	0.83[EUR][1000 genomes]
rs7092121	0.84[EUR][1000 genomes]
rs72788929	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs755176	0.82[EUR][1000 genomes]
rs8181341	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv528472	chr10:19296750-19385248	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19377400-19391800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19383400-19385400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:19384200-19386000	Strong transcription	Duodenum Mucosa	Duodenum
4	chr10:19384200-19386600	Strong transcription	Fetal Intestine Large	intestine

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