Variant report

Variant	rs4748553
Chromosome Location	chr10:19385420-19385421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10159517	0.82[EUR][1000 genomes]
rs10218990	0.86[EUR][1000 genomes]
rs10508574	0.83[EUR][1000 genomes]
rs10740840	0.83[EUR][1000 genomes]
rs10740841	0.85[EUR][1000 genomes]
rs10826934	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826935	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826937	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10826946	0.85[EUR][1000 genomes]
rs10826949	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10826950	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10826951	0.82[EUR][1000 genomes]
rs2358278	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2358286	0.81[EUR][1000 genomes]
rs2358288	0.81[EUR][1000 genomes]
rs2358289	0.81[EUR][1000 genomes]
rs2358293	0.81[EUR][1000 genomes]
rs2358297	0.84[EUR][1000 genomes]
rs2358298	0.83[EUR][1000 genomes]
rs2358299	0.83[EUR][1000 genomes]
rs2358300	0.84[EUR][1000 genomes]
rs2358301	0.83[EUR][1000 genomes]
rs2358302	0.83[EUR][1000 genomes]
rs2358305	0.83[EUR][1000 genomes]
rs2358306	0.85[EUR][1000 genomes]
rs2358307	0.85[EUR][1000 genomes]
rs2358310	0.84[EUR][1000 genomes]
rs2358311	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2358312	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2358313	0.82[EUR][1000 genomes]
rs2358314	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2358315	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2884422	0.80[EUR][1000 genomes]
rs4265498	0.83[EUR][1000 genomes]
rs4353174	0.83[EUR][1000 genomes]
rs4436459	0.80[EUR][1000 genomes]
rs4465279	0.80[EUR][1000 genomes]
rs4509661	0.80[EUR][1000 genomes]
rs4748547	0.80[EUR][1000 genomes]
rs4748549	0.83[EUR][1000 genomes]
rs4748550	0.86[EUR][1000 genomes]
rs4748551	0.86[EUR][1000 genomes]
rs4748552	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7069170	0.84[EUR][1000 genomes]
rs7069990	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7081765	0.80[ASN][1000 genomes]
rs7085520	0.84[EUR][1000 genomes]
rs7088261	0.80[EUR][1000 genomes]
rs7092121	0.85[EUR][1000 genomes]
rs72788929	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs755176	0.83[EUR][1000 genomes]
rs8181341	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19377400-19391800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19384200-19386000	Strong transcription	Duodenum Mucosa	Duodenum
3	chr10:19384200-19386600	Strong transcription	Fetal Intestine Large	intestine
4	chr10:19385200-19385800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:19385400-19385600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:19385400-19385800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr10:19385400-19386000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr10:19385400-19386200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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