Variant report

Variant	rs2389581
Chromosome Location	chr7:16118171-16118172
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16117333..16118268-chr7:16137909..16139062,6	MCF-7	breast:
2	chr7:16117946..16118585-chr7:16603959..16604943,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1528136	0.89[ASN][1000 genomes]
rs1528147	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1528149	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17285792	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17286418	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17287882	0.80[ASN][1000 genomes]
rs17357253	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17357511	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358277	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17359183	0.89[ASN][1000 genomes]
rs17359294	0.89[ASN][1000 genomes]
rs28422957	0.83[EUR][1000 genomes]
rs3857708	0.85[ASN][1000 genomes]
rs3857709	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4621696	0.85[ASN][1000 genomes]
rs56290213	0.98[ASN][1000 genomes]
rs60333130	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62439474	0.89[ASN][1000 genomes]
rs62440849	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62440852	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62440855	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62442360	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62442361	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6952865	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73056339	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs740823	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16117200-16118200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr7:16117200-16126400	Weak transcription	Aorta	Aorta
3	chr7:16117600-16118200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:16117600-16118200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:16117600-16118200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:16117600-16118200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:16117600-16118200	Enhancers	Brain Hippocampus Middle	brain
8	chr7:16117600-16118400	Enhancers	HUVEC	blood vessel
9	chr7:16117800-16118200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:16117800-16118200	Enhancers	Primary hematopoietic stem cells	blood
11	chr7:16117800-16118200	Enhancers	Liver	Liver
12	chr7:16117800-16118200	Enhancers	Stomach Mucosa	stomach
13	chr7:16117800-16118200	Enhancers	K562	blood
14	chr7:16117800-16118400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:16118000-16118200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:16118000-16118200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:16118000-16118200	Enhancers	Fetal Muscle Leg	muscle

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