Variant report

Variant	rs17359294
Chromosome Location	chr7:16164514-16164515
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16163332..16166682-chr7:16168579..16171460,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10487915	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1527219	0.83[EUR][1000 genomes]
rs1527220	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1527221	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1528136	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528147	0.84[ASN][1000 genomes]
rs1528149	0.86[ASN][1000 genomes]
rs17285792	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17286418	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17287882	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17357253	0.87[ASN][1000 genomes]
rs17357511	0.89[ASN][1000 genomes]
rs17358277	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359183	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17672493	0.87[EUR][1000 genomes]
rs1918259	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1918260	0.83[EUR][1000 genomes]
rs1949952	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1978253	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2389581	0.89[ASN][1000 genomes]
rs35150436	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3857708	0.95[ASN][1000 genomes]
rs3857709	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4621696	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56290213	0.86[ASN][1000 genomes]
rs62439474	1.00[ASN][1000 genomes]
rs62440374	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62440376	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62440849	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62440852	0.89[ASN][1000 genomes]
rs62440855	0.89[ASN][1000 genomes]
rs62442360	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62442361	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6952865	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6961874	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6963052	0.87[EUR][1000 genomes]
rs73056339	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740823	0.86[ASN][1000 genomes]
rs7778438	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1035015	chr7:16144928-16273061	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1847175	chr7:16155335-16272661	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16158200-16170400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:16163400-16169000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links