Variant report

Variant	rs17358277
Chromosome Location	chr7:16133320-16133321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr7:16133271-16133481	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000273477	TF binding region
ENSG00000230981	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10487915	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1528136	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528147	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1528149	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17285792	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17286418	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17287882	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17357253	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17357511	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17359183	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359294	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17672493	0.81[EUR][1000 genomes]
rs1918260	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1949952	0.82[EUR][1000 genomes]
rs1978253	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2389581	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35150436	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3857708	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3857709	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4621696	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56161298	0.81[AFR][1000 genomes]
rs56290213	0.86[ASN][1000 genomes]
rs60333130	0.85[AMR][1000 genomes]
rs62439474	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62440374	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62440376	0.81[EUR][1000 genomes]
rs62440849	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62440852	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62440855	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62442360	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62442361	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6952865	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6963052	0.82[EUR][1000 genomes]
rs73056339	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740823	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7778438	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16122400-16135400	Weak transcription	Left Ventricle	heart
2	chr7:16131600-16135400	Weak transcription	Fetal Stomach	stomach
3	chr7:16131800-16138000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:16132000-16135400	Weak transcription	Right Atrium	heart
5	chr7:16132000-16137400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:16132400-16137000	Weak transcription	HUVEC	blood vessel
7	chr7:16133000-16134200	Weak transcription	Fetal Lung	lung

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