Variant report

Variant	rs3857709
Chromosome Location	chr7:16140102-16140103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10487915	0.84[EUR][1000 genomes]
rs1527219	0.84[CEU][hapmap]
rs1527220	0.90[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs1527221	0.82[EUR][1000 genomes]
rs1528136	0.90[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1528147	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1528149	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17285792	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17286418	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17287882	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17357253	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17357511	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17358277	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17359183	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17359294	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17672493	0.84[EUR][1000 genomes]
rs1918259	0.90[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs1918260	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1949952	0.84[EUR][1000 genomes]
rs1978253	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2389581	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35150436	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3857708	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4621696	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56161298	0.81[AFR][1000 genomes]
rs56290213	0.82[ASN][1000 genomes]
rs60333130	0.86[AMR][1000 genomes]
rs62439474	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs62440374	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62440376	0.84[EUR][1000 genomes]
rs62440849	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62440852	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62440855	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62442360	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62442361	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6952865	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6961874	0.82[EUR][1000 genomes]
rs6963052	0.84[EUR][1000 genomes]
rs73056339	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs740823	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7778438	1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs987932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16135800-16145200	Weak transcription	Left Ventricle	heart
2	chr7:16139800-16143600	Weak transcription	Fetal Lung	lung

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