Variant report

Variant	rs1528136
Chromosome Location	chr7:16129643-16129644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr7:16129396-16129849	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16127250..16129202-chr7:16129433..16131749,2	K562	blood:

Variant related genes	Relation type
ENSG00000273477	TF binding region
ENSG00000230981	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1527219	0.82[CEU][hapmap]
rs1527220	0.85[CEU][hapmap]
rs1528147	0.84[ASN][1000 genomes]
rs1528149	0.86[ASN][1000 genomes]
rs17285792	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17286418	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17287882	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17357253	0.87[ASN][1000 genomes]
rs17357511	0.89[ASN][1000 genomes]
rs17358277	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359183	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359294	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918259	0.84[CEU][hapmap]
rs1978253	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2389581	0.89[ASN][1000 genomes]
rs35150436	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3857708	0.95[ASN][1000 genomes]
rs3857709	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4621696	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56290213	0.86[ASN][1000 genomes]
rs62439474	1.00[ASN][1000 genomes]
rs62440374	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62440849	0.84[ASN][1000 genomes]
rs62440852	0.89[ASN][1000 genomes]
rs62440855	0.89[ASN][1000 genomes]
rs62442360	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62442361	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6952865	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73056339	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740823	0.86[ASN][1000 genomes]
rs987932	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16122200-16133000	Weak transcription	Psoas Muscle	Psoas
2	chr7:16122400-16135400	Weak transcription	Left Ventricle	heart
3	chr7:16124400-16131400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:16127400-16131000	Weak transcription	HUVEC	blood vessel
5	chr7:16128600-16131400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:16129400-16129800	Enhancers	Fetal Muscle Leg	muscle

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