Variant report

Variant	rs987932
Chromosome Location	chr7:16154321-16154322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16153945..16154474-chr7:16460404..16460914,2	MCF-7	breast:
2	chr7:16153898..16154837-chr7:16604199..16605221,3	MCF-7	breast:
3	chr7:16153998..16154693-chr7:16604258..16605163,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10487915	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1527219	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1527220	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1527221	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1528136	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1528147	0.87[ASN][1000 genomes]
rs1528149	0.84[ASN][1000 genomes]
rs17150159	1.00[YRI][hapmap]
rs17285792	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17286418	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17287882	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17357253	0.89[ASN][1000 genomes]
rs17357511	0.87[ASN][1000 genomes]
rs17358277	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17359183	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17359294	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17672493	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1918259	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1918260	0.83[EUR][1000 genomes]
rs1949952	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1978253	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2389581	0.87[ASN][1000 genomes]
rs35150436	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3857708	0.93[ASN][1000 genomes]
rs3857709	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4621696	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56290213	0.84[ASN][1000 genomes]
rs60333130	0.80[ASN][1000 genomes]
rs62439474	0.98[ASN][1000 genomes]
rs62440374	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62440376	0.87[EUR][1000 genomes]
rs62440849	0.87[ASN][1000 genomes]
rs62440852	0.87[ASN][1000 genomes]
rs62440855	0.87[ASN][1000 genomes]
rs62442360	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62442361	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6952865	0.87[ASN][1000 genomes]
rs6961874	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6963052	0.87[EUR][1000 genomes]
rs73056339	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs740823	0.84[ASN][1000 genomes]
rs7778438	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs7788119	1.00[YRI][hapmap]
rs7797951	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1035015	chr7:16144928-16273061	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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