Variant report

Variant	rs6963052
Chromosome Location	chr7:16211529-16211530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16211386..16214233-chr7:16216618..16219049,2	MCF-7	breast:
2	chr7:16192281..16194569-chr7:16210731..16212589,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10487915	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1527208	0.85[EUR][1000 genomes]
rs1527219	0.86[CEU][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1527220	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1527221	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17286418	0.82[EUR][1000 genomes]
rs17287882	0.87[EUR][1000 genomes]
rs17358277	0.82[EUR][1000 genomes]
rs17359183	0.86[EUR][1000 genomes]
rs17359294	0.87[EUR][1000 genomes]
rs17458603	0.85[EUR][1000 genomes]
rs17672493	0.93[EUR][1000 genomes]
rs1918259	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1918260	0.88[EUR][1000 genomes]
rs1918266	0.82[EUR][1000 genomes]
rs1918267	0.82[EUR][1000 genomes]
rs1949952	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1978253	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35150436	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3857709	0.84[EUR][1000 genomes]
rs4621696	0.84[EUR][1000 genomes]
rs4721485	0.85[EUR][1000 genomes]
rs56024841	0.82[EUR][1000 genomes]
rs56161298	0.83[EUR][1000 genomes]
rs61282805	0.81[EUR][1000 genomes]
rs62440374	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62440376	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62440394	0.86[EUR][1000 genomes]
rs62440406	0.82[EUR][1000 genomes]
rs62442360	0.87[EUR][1000 genomes]
rs62442361	0.82[EUR][1000 genomes]
rs6956986	0.82[EUR][1000 genomes]
rs6961874	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6974124	0.82[EUR][1000 genomes]
rs73056339	0.87[EUR][1000 genomes]
rs7778438	0.91[EUR][1000 genomes]
rs987932	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1035015	chr7:16144928-16273061	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1847175	chr7:16155335-16272661	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1844385	chr7:16168502-16211553	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16211400-16211800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr7:16211400-16212200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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