Variant report

Variant	rs2392037
Chromosome Location	chr1:76765167-76765168
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76758604..76761482-chr1:76764775..76767017,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10782610	0.80[ASN][1000 genomes]
rs10782611	1.00[CHB][hapmap]
rs10873874	0.82[CHB][hapmap]
rs10873875	1.00[CHB][hapmap]
rs10873876	0.89[CHB][hapmap];0.97[CHD][hapmap]
rs1335862	0.83[JPT][hapmap]
rs1335863	1.00[CEU][hapmap]
rs1360878	0.83[JPT][hapmap]
rs1414480	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1414482	0.83[JPT][hapmap]
rs1414483	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs1414484	1.00[CEU][hapmap];0.92[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1414485	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs1414487	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs1537783	0.82[JPT][hapmap]
rs1537784	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1570823	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17098538	1.00[CEU][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes]
rs2065794	0.89[EUR][1000 genomes]
rs2210831	1.00[CEU][hapmap]
rs2225784	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs2392035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34995712	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36115631	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3851267	1.00[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3903914	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs3904687	1.00[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3920772	1.00[CEU][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap]
rs4083857	0.83[JPT][hapmap]
rs4480406	0.83[JPT][hapmap]
rs4607942	0.83[JPT][hapmap]
rs4949702	0.83[JPT][hapmap]
rs6593527	1.00[CEU][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap]
rs6657540	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs6695042	1.00[CEU][hapmap]
rs6701166	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs7516589	1.00[CEU][hapmap]
rs9437129	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9437395	0.83[JPT][hapmap]
rs9437407	1.00[CEU][hapmap];0.81[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs945365	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76755800-76783000	Weak transcription	Fetal Lung	lung
2	chr1:76759800-76766600	Weak transcription	Brain Substantia Nigra	brain
3	chr1:76760400-76779200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:76761000-76766200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:76761200-76768200	Enhancers	Primary T cells from cord blood	blood
6	chr1:76761400-76765200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr1:76763200-76767600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:76763800-76765200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:76763800-76765600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:76763800-76767000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr1:76763800-76768600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr1:76764000-76769000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:76764000-76769200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr1:76764000-76769600	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr1:76764200-76768200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr1:76764600-76766600	Enhancers	Primary T cells fromperipheralblood	blood
17	chr1:76764600-76767800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:76764800-76766000	Weak transcription	Fetal Thymus	thymus
19	chr1:76764800-76768400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr1:76765000-76767200	Enhancers	Fetal Heart	heart
21	chr1:76765000-76769400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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