Variant report

Variant	rs2412066
Chromosome Location	chr14:65403114-65403115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65394304..65397990-chr14:65402248..65406876,4	MCF-7	breast:
2	chr14:65398098..65401847-chr14:65402918..65405946,5	MCF-7	breast:
3	chr14:65379688..65381609-chr14:65402993..65405466,2	MCF-7	breast:
4	chr14:65387204..65389261-chr14:65402444..65405344,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125954	Chromatin interaction
ENSG00000258289	Chromatin interaction

rs_ID	r²[population]
rs10129583	1.00[AMR][1000 genomes]
rs17102279	0.89[AMR][1000 genomes]
rs17880145	0.86[EUR][1000 genomes]
rs28374620	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28511277	1.00[EUR][1000 genomes]
rs45599336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281722	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281728	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382000-65409200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:65382400-65409200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
5	chr14:65382800-65404200	Weak transcription	Stomach Mucosa	stomach
6	chr14:65383000-65419400	Weak transcription	K562	blood
7	chr14:65383800-65403800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr14:65384400-65404800	Weak transcription	Gastric	stomach
9	chr14:65386400-65409200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:65390600-65409600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr14:65390600-65409800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr14:65390800-65403200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:65390800-65407000	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:65393400-65404000	Weak transcription	Right Ventricle	heart
15	chr14:65393400-65422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:65393800-65404600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:65393800-65409200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr14:65394200-65403600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr14:65395400-65404600	Weak transcription	Fetal Intestine Small	intestine
20	chr14:65395600-65403800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:65396000-65403600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:65396000-65403600	Weak transcription	Brain Substantia Nigra	brain
23	chr14:65396000-65405200	Weak transcription	Fetal Stomach	stomach
24	chr14:65396000-65409600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr14:65396000-65410400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:65396000-65413600	Weak transcription	Fetal Brain Female	brain
27	chr14:65396000-65417800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr14:65396200-65404000	Weak transcription	Pancreas	Pancrea
29	chr14:65396200-65405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:65396200-65405600	Weak transcription	Spleen	Spleen
31	chr14:65396200-65408200	Strong transcription	Primary B cells from peripheral blood	blood
32	chr14:65396600-65406000	Weak transcription	NHDF-Ad	bronchial
33	chr14:65397000-65404000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr14:65397200-65407200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:65397400-65403400	Weak transcription	Fetal Heart	heart
36	chr14:65397400-65411200	Strong transcription	Dnd41	blood
37	chr14:65397800-65405800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:65398000-65405200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr14:65398200-65405400	Weak transcription	Aorta	Aorta
40	chr14:65398200-65405600	Weak transcription	Lung	lung
41	chr14:65398600-65404800	Weak transcription	NHEK	skin
42	chr14:65399000-65403800	Weak transcription	Brain Anterior Caudate	brain
43	chr14:65399000-65428000	Weak transcription	NHLF	lung
44	chr14:65399200-65404000	Weak transcription	Fetal Kidney	kidney
45	chr14:65399200-65412400	Weak transcription	Brain Germinal Matrix	brain
46	chr14:65399400-65405600	Weak transcription	Colonic Mucosa	Colon
47	chr14:65399800-65403200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr14:65400000-65405400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr14:65400000-65406000	Weak transcription	Esophagus	oesophagus
50	chr14:65400000-65410400	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links