Variant report

Variant	rs73281728
Chromosome Location	chr14:65394028-65394029
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65380579..65384480-chr14:65390113..65394782,6	MCF-7	breast:
2	chr14:65379584..65383779-chr14:65391377..65398715,8	MCF-7	breast:
3	chr14:65389456..65391707-chr14:65393216..65394739,2	K562	blood:

Variant related genes	Relation type
ENSG00000125954	Chromatin interaction
ENSG00000258289	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10129583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102279	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2412066	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28374620	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28525968	1.00[EUR][1000 genomes]
rs28712548	1.00[EUR][1000 genomes]
rs45599336	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73279851	1.00[EUR][1000 genomes]
rs73279855	1.00[EUR][1000 genomes]
rs73281722	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382000-65399200	Weak transcription	Esophagus	oesophagus
2	chr14:65382000-65409200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:65382200-65394800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:65382200-65395600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:65382400-65409200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
8	chr14:65382800-65394400	Weak transcription	Small Intestine	intestine
9	chr14:65382800-65394600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:65382800-65404200	Weak transcription	Stomach Mucosa	stomach
11	chr14:65383000-65394800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:65383000-65419400	Weak transcription	K562	blood
13	chr14:65383800-65403800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr14:65384400-65404800	Weak transcription	Gastric	stomach
15	chr14:65385600-65395800	Weak transcription	Pancreas	Pancrea
16	chr14:65386400-65409200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr14:65386600-65394200	Weak transcription	Psoas Muscle	Psoas
18	chr14:65387400-65395800	Weak transcription	Aorta	Aorta
19	chr14:65388400-65394600	Strong transcription	Fetal Thymus	thymus
20	chr14:65389400-65394400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr14:65389400-65395000	Strong transcription	Primary B cells from cord blood	blood
22	chr14:65390000-65396400	Strong transcription	HSMM	muscle
23	chr14:65390200-65399200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:65390400-65396200	Strong transcription	Liver	Liver
25	chr14:65390400-65398000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr14:65390600-65394200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
27	chr14:65390600-65394400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr14:65390600-65394600	Genic enhancers	Primary T cells from cord blood	blood
29	chr14:65390600-65395000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
30	chr14:65390600-65395200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:65390600-65395800	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr14:65390600-65396000	Strong transcription	Brain Anterior Caudate	brain
33	chr14:65390600-65396200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr14:65390600-65396200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:65390600-65396200	Strong transcription	Duodenum Mucosa	Duodenum
36	chr14:65390600-65396200	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr14:65390600-65396400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr14:65390600-65396600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr14:65390600-65396600	Strong transcription	Fetal Muscle Leg	muscle
40	chr14:65390600-65397200	Strong transcription	Fetal Intestine Large	intestine
41	chr14:65390600-65398000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:65390600-65400400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr14:65390600-65400600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr14:65390600-65401800	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr14:65390600-65409600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr14:65390600-65409800	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr14:65390800-65395000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr14:65390800-65395000	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr14:65390800-65395400	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr14:65390800-65395600	Strong transcription	Colon Smooth Muscle	Colon

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