Variant report

Variant	rs10129583
Chromosome Location	chr14:65375297-65375298
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17102220	1.00[CEU][hapmap]
rs17102279	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17180518	1.00[CEU][hapmap]
rs2412066	1.00[AMR][1000 genomes]
rs28374620	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28513664	0.85[AFR][1000 genomes]
rs28525968	1.00[EUR][1000 genomes]
rs28712548	1.00[EUR][1000 genomes]
rs45599336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs714924	1.00[CEU][hapmap]
rs73279851	1.00[EUR][1000 genomes]
rs73279855	1.00[EUR][1000 genomes]
rs73281722	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693169	chr14:65344400-65381068	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1311	chr14:65352722-65379802	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65373200-65376000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr14:65373800-65379000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr14:65374000-65379200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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