Variant report

Variant	rs28374620
Chromosome Location	chr14:65391212-65391213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65380332..65384001-chr14:65388831..65392561,3	K562	blood:
2	chr14:65380579..65384480-chr14:65390113..65394782,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125954	Chromatin interaction
ENSG00000258289	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10129583	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102279	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2412066	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28525968	1.00[EUR][1000 genomes]
rs28712548	1.00[EUR][1000 genomes]
rs45599336	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73279851	1.00[EUR][1000 genomes]
rs73279855	1.00[EUR][1000 genomes]
rs73281722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281728	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382000-65399200	Weak transcription	Esophagus	oesophagus
2	chr14:65382000-65409200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:65382200-65391600	Weak transcription	Ovary	ovary
4	chr14:65382200-65394800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:65382200-65395600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:65382400-65391400	Weak transcription	Colonic Mucosa	Colon
7	chr14:65382400-65391600	Weak transcription	Fetal Stomach	stomach
8	chr14:65382400-65394000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:65382400-65409200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
12	chr14:65382800-65391400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:65382800-65392000	Weak transcription	Fetal Intestine Small	intestine
14	chr14:65382800-65393000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr14:65382800-65393000	Weak transcription	Right Ventricle	heart
16	chr14:65382800-65393000	Weak transcription	NHLF	lung
17	chr14:65382800-65394400	Weak transcription	Small Intestine	intestine
18	chr14:65382800-65394600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:65382800-65404200	Weak transcription	Stomach Mucosa	stomach
20	chr14:65383000-65391400	Weak transcription	Thymus	Thymus
21	chr14:65383000-65393200	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:65383000-65394800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:65383000-65419400	Weak transcription	K562	blood
24	chr14:65383800-65403800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr14:65384400-65404800	Weak transcription	Gastric	stomach
26	chr14:65385600-65393000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr14:65385600-65393000	Weak transcription	Lung	lung
28	chr14:65385600-65395800	Weak transcription	Pancreas	Pancrea
29	chr14:65386000-65393200	Weak transcription	Fetal Heart	heart
30	chr14:65386400-65409200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr14:65386600-65391600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:65386600-65393200	Weak transcription	NHEK	skin
33	chr14:65386600-65394200	Weak transcription	Psoas Muscle	Psoas
34	chr14:65387400-65391400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr14:65387400-65392000	Weak transcription	Spleen	Spleen
36	chr14:65387400-65395800	Weak transcription	Aorta	Aorta
37	chr14:65388400-65394600	Strong transcription	Fetal Thymus	thymus
38	chr14:65388600-65391800	Weak transcription	A549	lung
39	chr14:65389400-65394400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr14:65389400-65395000	Strong transcription	Primary B cells from cord blood	blood
41	chr14:65389800-65394000	Strong transcription	Primary B cells from peripheral blood	blood
42	chr14:65390000-65396400	Strong transcription	HSMM	muscle
43	chr14:65390200-65399200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:65390400-65396200	Strong transcription	Liver	Liver
45	chr14:65390400-65398000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr14:65390600-65391600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr14:65390600-65391800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr14:65390600-65391800	Strong transcription	NHDF-Ad	bronchial
49	chr14:65390600-65392000	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr14:65390600-65392200	Strong transcription	Muscle Satellite Cultured Cells	--

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