Variant report

Variant	rs73279851
Chromosome Location	chr14:65359048-65359049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65289524..65290526-chr14:65358021..65359324,8	K562	blood:
2	chr14:65264347..65266634-chr14:65358841..65360422,2	MCF-7	breast:
3	chr14:65288738..65289433-chr14:65358177..65359166,2	K562	blood:
4	chr14:65238323..65239708-chr14:65358202..65359292,7	MCF-7	breast:
5	chr14:65238831..65239785-chr14:65358174..65359063,5	MCF-7	breast:
6	chr14:65289311..65290700-chr14:65357720..65359432,13	MCF-7	breast:
7	chr14:65267486..65269217-chr14:65357718..65359262,14	MCF-7	breast:
8	chr14:65289223..65290628-chr14:65357779..65359171,7	MCF-7	breast:
9	chr14:65358336..65361161-chr14:65365213..65366947,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10129583	1.00[EUR][1000 genomes]
rs17102279	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28374620	1.00[EUR][1000 genomes]
rs28525968	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28712548	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45599336	1.00[EUR][1000 genomes]
rs73279855	1.00[EUR][1000 genomes]
rs73281722	1.00[EUR][1000 genomes]
rs73281728	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693169	chr14:65344400-65381068	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1311	chr14:65352722-65379802	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv510638	chr14:65353025-65368298	Enhancers Bivalent Enhancer Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv993830	chr14:65357515-65363884	Enhancers Weak transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65358600-65368000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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