Variant report

Variant	rs17102279
Chromosome Location	chr14:65367508-65367509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10129583	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2412066	0.89[AMR][1000 genomes]
rs28374620	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28525968	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28712548	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45599336	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73279851	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73279855	1.00[EUR][1000 genomes]
rs73281722	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281728	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693169	chr14:65344400-65381068	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1311	chr14:65352722-65379802	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv510638	chr14:65353025-65368298	Enhancers Bivalent Enhancer Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65358600-65368000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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