Variant report

Variant	rs241519
Chromosome Location	chr14:56563894-56563895
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1046597	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2343374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241515	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs241516	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs241517	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241520	0.83[EUR][1000 genomes]
rs241548	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs241550	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs241557	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs241559	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs241560	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs241566	0.81[EUR][1000 genomes]
rs241567	0.93[ASN][1000 genomes]
rs242387	0.84[EUR][1000 genomes]
rs242388	0.88[CEU][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3912202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7151231	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7156867	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7157440	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs241519	C14orf166	cis	cerebellum	SCAN
rs241519	ERO1L	cis	parietal	SCAN
rs241519	PELI2	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56556200-56565800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:56561400-56566200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:56562200-56566200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr14:56563600-56564000	Enhancers	Fetal Lung	lung
5	chr14:56563600-56564000	Enhancers	Pancreas	Pancrea
6	chr14:56563600-56564200	Enhancers	Fetal Brain Male	brain
7	chr14:56563600-56564200	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr14:56563800-56564400	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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