Variant report

Variant	rs241560
Chromosome Location	chr14:56550930-56550931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1046597	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2343374	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs241515	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs241516	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs241517	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs241519	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs241548	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241550	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs241557	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs241559	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs241566	0.80[EUR][1000 genomes]
rs241567	0.90[ASN][1000 genomes]
rs242388	0.92[CEU][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs3912202	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7151231	0.83[EUR][1000 genomes]
rs7156867	0.83[EUR][1000 genomes]
rs7157440	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs241560	ERO1L	cis	parietal	SCAN
rs241560	PELI2	cis	parietal	SCAN
rs241560	C14orf166	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56541000-56554200	Weak transcription	Gastric	stomach
2	chr14:56549400-56554200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:56549400-56554200	Weak transcription	Dnd41	blood
4	chr14:56549400-56554600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:56550600-56551000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:56550800-56551200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr14:56550800-56551200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr14:56550800-56551200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr14:56550800-56554000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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