Variant report

Variant	rs7157440
Chromosome Location	chr14:56581710-56581711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1046597	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2343374	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs241515	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241516	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241517	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs241519	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs241520	0.80[EUR][1000 genomes]
rs241548	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs241550	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs241557	0.88[EUR][1000 genomes]
rs241559	0.88[EUR][1000 genomes]
rs241560	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs241567	0.87[ASN][1000 genomes]
rs242387	0.81[EUR][1000 genomes]
rs242388	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3912202	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151231	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7156867	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56574000-56582600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr14:56579800-56582800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:56579800-56584200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:56580200-56582000	Weak transcription	Primary T cells from cord blood	blood
5	chr14:56580200-56582600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr14:56580200-56583200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr14:56580400-56582200	Weak transcription	Primary B cells from cord blood	blood
8	chr14:56580400-56582600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr14:56580600-56581800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr14:56581000-56582000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr14:56581000-56582000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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