Variant report

Variant	rs241882
Chromosome Location	chr22:33292913-33292914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000199248	Chromatin interaction
ENSG00000100170	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000184708	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs241887	0.90[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs241888	0.90[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs241894	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs241895	0.95[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241898	0.95[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241899	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241900	0.95[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241902	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs241903	1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28513904	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5749537	0.88[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs5754331	0.82[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs241882	SYN3	cis	parietal	SCAN
rs241882	C22orf27	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33277000-33302000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33283600-33299600	Weak transcription	Right Atrium	heart
3	chr22:33287800-33309600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:33287800-33312000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr22:33289000-33297200	Weak transcription	Fetal Heart	heart
6	chr22:33290000-33312000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr22:33291200-33294600	Enhancers	Placenta	Placenta
8	chr22:33292800-33293600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr22:33292800-33293800	Enhancers	Duodenum Mucosa	Duodenum
10	chr22:33292800-33293800	Enhancers	Fetal Intestine Large	intestine
11	chr22:33292800-33293800	Enhancers	K562	blood
12	chr22:33292800-33294600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr22:33292800-33294600	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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