Variant report

Variant	rs241888
Chromosome Location	chr22:33314595-33314596
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33300095..33301805-chr22:33313457..33316283,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16991240	0.80[YRI][hapmap]
rs241882	0.90[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs241887	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241894	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs241895	0.95[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs241898	0.95[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs241899	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs241900	0.95[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs241902	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs241903	0.92[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28513904	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5749537	0.89[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs5754331	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs929111	0.83[YRI][hapmap]
rs9609643	0.80[YRI][hapmap]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33312800-33318400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr22:33313200-33318400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr22:33313400-33314800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr22:33313400-33315000	Enhancers	Fetal Muscle Trunk	muscle
5	chr22:33313400-33315000	Enhancers	Fetal Muscle Leg	muscle
6	chr22:33313400-33315000	Enhancers	Spleen	Spleen
7	chr22:33313400-33315200	Enhancers	Fetal Stomach	stomach
8	chr22:33313400-33317800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr22:33313400-33319600	Enhancers	Fetal Lung	lung
10	chr22:33313600-33317000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr22:33313800-33315200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr22:33314000-33316000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr22:33314000-33316000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr22:33314000-33316200	Weak transcription	Fetal Brain Female	brain
15	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr22:33314200-33315000	Enhancers	Colonic Mucosa	Colon
17	chr22:33314200-33315600	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr22:33314200-33316000	Weak transcription	Adipose Nuclei	Adipose
19	chr22:33314200-33316000	Weak transcription	Fetal Brain Male	brain
20	chr22:33314200-33316000	Weak transcription	Left Ventricle	heart
21	chr22:33314200-33316200	Weak transcription	Right Ventricle	heart
22	chr22:33314200-33316600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr22:33314200-33318600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr22:33314200-33323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr22:33314200-33332200	Weak transcription	HepG2	liver
26	chr22:33314400-33314800	Weak transcription	Placenta	Placenta
27	chr22:33314400-33314800	Weak transcription	Right Atrium	heart
28	chr22:33314400-33315000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr22:33314400-33316000	Weak transcription	Fetal Heart	heart

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