Variant report

Variant	rs241900
Chromosome Location	chr22:33279237-33279238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:33277550..33279895-chr22:33281919..33283776,2	K562	blood:
2	22:32920308-32927723..22:33273392-33279610	K562	blood:
3	chr22:33277494..33279713-chr22:33299469..33301691,2	K562	blood:
4	22:32292186-32294405..22:33273392-33279610	K562	blood:
5	chr22:33258265..33260703-chr22:33277216..33279656,2	K562	blood:

Variant related genes	Relation type
ENSG00000185666	Chromatin interaction
ENSG00000100150	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs241882	0.95[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241887	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241888	0.95[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs241894	0.95[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs241895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241899	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241902	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241903	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28513904	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5749537	0.84[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs5754331	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33237400-33282200	Weak transcription	Fetal Brain Female	brain
2	chr22:33257800-33282000	Weak transcription	HepG2	liver
3	chr22:33265200-33282000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33265600-33287000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr22:33270800-33287200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr22:33274200-33286200	Enhancers	Fetal Heart	heart
7	chr22:33275000-33280200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr22:33275400-33279600	Enhancers	Primary hematopoietic stem cells	blood
9	chr22:33275400-33279600	Enhancers	Fetal Muscle Leg	muscle
10	chr22:33275400-33285400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr22:33275800-33284000	Enhancers	Fetal Stomach	stomach
12	chr22:33276000-33279600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr22:33276200-33279400	Enhancers	Fetal Lung	lung
14	chr22:33277000-33284800	Weak transcription	Ovary	ovary
15	chr22:33277000-33302000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr22:33277600-33280000	Enhancers	Fetal Thymus	thymus
17	chr22:33277600-33282800	Weak transcription	Right Atrium	heart
18	chr22:33277600-33283800	Weak transcription	HSMMtube	muscle
19	chr22:33277600-33285000	Weak transcription	Left Ventricle	heart
20	chr22:33278200-33283400	Weak transcription	Right Ventricle	heart
21	chr22:33278600-33279800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr22:33278600-33280000	Enhancers	K562	blood
23	chr22:33278800-33279400	Weak transcription	Fetal Kidney	kidney
24	chr22:33279000-33281400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr22:33279200-33279400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr22:33279200-33279400	Enhancers	Placenta	Placenta
27	chr22:33279200-33280000	Weak transcription	Fetal Brain Male	brain

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