Variant report

Variant	rs241895
Chromosome Location	chr22:33284335-33284336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs241882	0.95[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241887	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241888	0.95[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs241894	0.95[CEU][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs241898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241899	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241902	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241903	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28513904	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5749537	0.89[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs5754331	0.94[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs241895	C22orf27	cis	parietal	SCAN
rs241895	SYN3	cis	parietal	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33265600-33287000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:33270800-33287200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr22:33274200-33286200	Enhancers	Fetal Heart	heart
4	chr22:33275400-33285400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr22:33277000-33284800	Weak transcription	Ovary	ovary
6	chr22:33277000-33302000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr22:33277600-33285000	Weak transcription	Left Ventricle	heart
8	chr22:33279600-33287000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr22:33280000-33284800	Weak transcription	Fetal Kidney	kidney
10	chr22:33280000-33287400	Weak transcription	Fetal Thymus	thymus
11	chr22:33281800-33285200	Enhancers	K562	blood
12	chr22:33282200-33284800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr22:33282200-33285200	Enhancers	Fetal Lung	lung
14	chr22:33282200-33289400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr22:33282600-33284400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr22:33283000-33285000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr22:33283000-33289200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr22:33283400-33284400	Weak transcription	Fetal Muscle Leg	muscle
19	chr22:33283400-33284600	Weak transcription	Fetal Brain Male	brain
20	chr22:33283400-33285000	Enhancers	Colon Smooth Muscle	Colon
21	chr22:33283600-33299600	Weak transcription	Right Atrium	heart
22	chr22:33283800-33284600	Enhancers	Rectal Smooth Muscle	rectum
23	chr22:33283800-33284800	Weak transcription	Right Ventricle	heart
24	chr22:33283800-33285400	Enhancers	HSMMtube	muscle
25	chr22:33284200-33285000	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links