Variant report

Variant	rs28513904
Chromosome Location	chr22:33319908-33319909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs241882	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs241887	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241888	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241894	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs241895	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241898	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241899	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241900	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241902	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs241903	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5749537	0.85[ASN][1000 genomes]
rs5754331	0.87[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33314200-33323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr22:33314200-33332200	Weak transcription	HepG2	liver
4	chr22:33315600-33328200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr22:33316800-33320800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr22:33318400-33320600	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr22:33318600-33320800	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr22:33319200-33324800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr22:33319200-33333000	Weak transcription	Fetal Brain Male	brain
10	chr22:33319600-33325400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr22:33319600-33325600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr22:33319600-33326800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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