Variant report

Variant	rs241958
Chromosome Location	chr19:38282158-38282159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs2216299	1.00[AMR][1000 genomes]
rs2248576	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2385006	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs241934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs241936	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs241938	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs241939	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs241945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs241961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2891656	1.00[AMR][1000 genomes]
rs2909087	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2909089	1.00[AMR][1000 genomes]
rs2909090	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2909091	1.00[AMR][1000 genomes]
rs2909094	1.00[AMR][1000 genomes]
rs2909095	1.00[AMR][1000 genomes]
rs2909096	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2909099	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2909101	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2909107	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972429	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972431	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972432	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972433	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972435	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972436	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972440	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972441	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972443	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972450	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972451	1.00[AMR][1000 genomes]
rs2972460	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3095723	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3095725	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3112436	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34301943	1.00[AMR][1000 genomes]
rs59246699	1.00[AMR][1000 genomes]
rs61744939	1.00[AMR][1000 genomes]
rs6508734	1.00[AMR][1000 genomes]
rs6508740	1.00[AMR][1000 genomes]
rs7245750	1.00[AMR][1000 genomes]
rs7249524	1.00[AMR][1000 genomes]
rs7250160	1.00[AMR][1000 genomes]
rs7251623	1.00[AMR][1000 genomes]
rs7252424	1.00[AMR][1000 genomes]
rs7259281	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[AMR][1000 genomes]
rs8106132	1.00[AMR][1000 genomes]
rs8112992	1.00[AMR][1000 genomes]
rs856294	1.00[AMR][1000 genomes]
rs856296	1.00[AMR][1000 genomes]
rs856297	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856303	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs978723	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv960835	chr19:38270238-38293706	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1057428	chr19:38282158-38320814	Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38281200-38282200	ZNF genes & repeats	Spleen	Spleen
2	chr19:38281200-38282400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:38281400-38283800	ZNF genes & repeats	Liver	Liver
4	chr19:38281600-38283600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr19:38282000-38287000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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