Variant report

Variant	rs2972451
Chromosome Location	chr19:38161655-38161656
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF781-2	chr19:38161555-38161747	NONHSAT066152

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs2216299	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2248576	1.00[AMR][1000 genomes]
rs2385006	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs241934	1.00[AMR][1000 genomes]
rs241936	1.00[AMR][1000 genomes]
rs241938	1.00[AMR][1000 genomes]
rs241939	1.00[AMR][1000 genomes]
rs241945	1.00[AMR][1000 genomes]
rs241958	1.00[AMR][1000 genomes]
rs241961	1.00[AMR][1000 genomes]
rs2891656	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2909087	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2909089	1.00[AMR][1000 genomes]
rs2909090	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2909091	1.00[AMR][1000 genomes]
rs2909092	0.81[AFR][1000 genomes]
rs2909094	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2909095	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2909096	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2909099	1.00[AMR][1000 genomes]
rs2909101	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2909107	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972429	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972431	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972432	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972433	1.00[AMR][1000 genomes]
rs2972435	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972436	1.00[AMR][1000 genomes]
rs2972440	1.00[AMR][1000 genomes]
rs2972441	1.00[AMR][1000 genomes]
rs2972443	1.00[AMR][1000 genomes]
rs2972450	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972460	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3095723	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3095725	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3112436	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34301943	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59246699	1.00[AMR][1000 genomes]
rs61744939	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6508734	1.00[AMR][1000 genomes]
rs6508740	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7245613	1.00[AMR][1000 genomes]
rs7245750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7249524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7250160	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7251623	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7252424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7259281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8106132	1.00[AMR][1000 genomes]
rs8107942	1.00[AMR][1000 genomes]
rs8112992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856294	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856296	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856297	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856303	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs978723	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38152000-38169000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:38156600-38165200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:38156600-38165200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:38159000-38161800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr19:38159000-38162600	ZNF genes & repeats	Liver	Liver
6	chr19:38159200-38165200	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr19:38159400-38161800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
8	chr19:38161000-38164400	Weak transcription	Ovary	ovary

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