The 2.0 version of rSNPBase

Variant report

Variant rs2909094
Chromosome Location chr19:38199579-38199580
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38183200-38208800 Weak transcription Fetal Heart heart
2 chr19:38184200-38201200 Weak transcription Colonic Mucosa Colon
3 chr19:38184400-38208800 Weak transcription HepG2 liver
4 chr19:38187000-38207800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr19:38187000-38208000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr19:38187400-38205800 Strong transcription Dnd41 blood
7 chr19:38187400-38208000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
8 chr19:38188200-38209200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr19:38188400-38202000 Weak transcription Placenta Placenta
10 chr19:38189400-38209200 Weak transcription ES-WA7 Cell Line embryonic stem cell
11 chr19:38190000-38206600 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr19:38190600-38209000 Weak transcription Brain Substantia Nigra brain
13 chr19:38190600-38209200 Weak transcription HSMMtube muscle
14 chr19:38190800-38202200 Weak transcription NH-A brain
15 chr19:38190800-38209000 Weak transcription Stomach Mucosa stomach
16 chr19:38190800-38209200 Weak transcription Fetal Thymus thymus
17 chr19:38190800-38209200 Weak transcription Psoas Muscle Psoas
18 chr19:38191200-38209200 Weak transcription H9 Cell Line embryonic stem cell
19 chr19:38191200-38209200 Weak transcription Colon Smooth Muscle Colon
20 chr19:38191600-38202000 Weak transcription Primary T killer memory cells from peripheral blood blood
21 chr19:38192200-38203000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr19:38193800-38209000 Weak transcription Hela-S3 cervix
23 chr19:38194000-38203000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr19:38194200-38202800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr19:38194600-38206600 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr19:38194800-38200400 Strong transcription Cortex derived primary cultured neurospheres brain
27 chr19:38195200-38204400 Strong transcription Breast Myoepithelial Primary Cells Breast
28 chr19:38195600-38201600 Strong transcription Fetal Stomach stomach
29 chr19:38195800-38199600 Strong transcription Brain Germinal Matrix brain
30 chr19:38196000-38200400 Strong transcription Placenta Amnion Placenta Amnion
31 chr19:38196000-38203000 ZNF genes & repeats Liver Liver
32 chr19:38196000-38204200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr19:38196200-38200800 Strong transcription Fetal Brain Female brain
34 chr19:38196200-38202200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr19:38196200-38202600 Strong transcription Left Ventricle heart
36 chr19:38196200-38204400 ZNF genes & repeats Primary hematopoietic stem cells blood
37 chr19:38196600-38202200 Strong transcription HUES6 Cell Line embryonic stem cell
38 chr19:38196600-38202200 Strong transcription Duodenum Smooth Muscle Duodenum
39 chr19:38196600-38202400 Strong transcription Stomach Smooth Muscle stomach
40 chr19:38196800-38202800 Strong transcription Fetal Muscle Trunk muscle
41 chr19:38197000-38200400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr19:38197000-38200600 Strong transcription Primary B cells from peripheral blood blood
43 chr19:38197000-38203000 Strong transcription HUES48 Cell Line embryonic stem cell
44 chr19:38197000-38203000 Strong transcription Brain Inferior Temporal Lobe brain
45 chr19:38197200-38199600 Strong transcription Small Intestine intestine
46 chr19:38197200-38200400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr19:38197200-38200800 Strong transcription Brain Hippocampus Middle brain
48 chr19:38197200-38200800 Strong transcription Rectal Mucosa Donor 29 rectum
49 chr19:38197200-38201000 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
50 chr19:38197200-38202800 Strong transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015