Variant report

Variant	rs2426508
Chromosome Location	chr20:53031653-53031654
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1477737	1.00[AMR][1000 genomes]
rs1812479	1.00[AMR][1000 genomes]
rs292115	1.00[AMR][1000 genomes]
rs292121	1.00[AMR][1000 genomes]
rs292124	1.00[AMR][1000 genomes]
rs292127	1.00[AMR][1000 genomes]
rs292130	1.00[AMR][1000 genomes]
rs292131	1.00[AMR][1000 genomes]
rs292133	1.00[AMR][1000 genomes]
rs292134	1.00[AMR][1000 genomes]
rs292136	1.00[AMR][1000 genomes]
rs292137	1.00[AMR][1000 genomes]
rs292138	1.00[AMR][1000 genomes]
rs292147	1.00[AMR][1000 genomes]
rs409262	1.00[AMR][1000 genomes]
rs6097908	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53031200-53031800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:53031400-53031800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr20:53031400-53032000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:53031400-53032000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:53031400-53032000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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