Variant report
| Variant | rs6097908 |
|---|---|
| Chromosome Location | chr20:52929515-52929516 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:52925826..52928871-chr20:52929162..52931995,4 | MCF-7 | breast: | |
| 2 | chr20:52927923..52929908-chr9:34651553..34653572,2 | MCF-7 | breast: | |
| 3 | chr20:52922402..52924055-chr20:52929439..52931142,2 | MCF-7 | breast: | |
| 4 | chr20:52823879..52827026-chr20:52929276..52932008,3 | MCF-7 | breast: | |
| 5 | chr20:52928133..52930874-chr20:52932134..52934559,2 | K562 | blood: | |
| 6 | chr20:52927379..52930182-chr20:53082106..53084205,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000137070 | Chromatin interaction |
| ENSG00000101132 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1477737 | 1.00[AMR][1000 genomes] |
| rs1812479 | 1.00[AMR][1000 genomes] |
| rs2169617 | 1.00[AMR][1000 genomes] |
| rs2426508 | 1.00[AMR][1000 genomes] |
| rs292115 | 1.00[AMR][1000 genomes] |
| rs292121 | 1.00[AMR][1000 genomes] |
| rs292124 | 1.00[AMR][1000 genomes] |
| rs292127 | 1.00[AMR][1000 genomes] |
| rs292130 | 1.00[AMR][1000 genomes] |
| rs292131 | 1.00[AMR][1000 genomes] |
| rs292133 | 1.00[AMR][1000 genomes] |
| rs292134 | 1.00[AMR][1000 genomes] |
| rs292136 | 1.00[AMR][1000 genomes] |
| rs292137 | 1.00[AMR][1000 genomes] |
| rs292138 | 1.00[AMR][1000 genomes] |
| rs292147 | 1.00[AMR][1000 genomes] |
| rs406902 | 1.00[AMR][1000 genomes] |
| rs409262 | 1.00[AMR][1000 genomes] |
| rs73912631 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv586224 | chr20:52474850-53279490 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 338 gene(s) | inside rSNPs | diseases |
| 2 | nsv834010 | chr20:52759824-52932939 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 119 gene(s) | inside rSNPs | diseases |
| 3 | nsv834011 | chr20:52858341-53086042 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 55 gene(s) | inside rSNPs | diseases |
| 4 | nsv834012 | chr20:52921007-53097177 | Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
