Variant report

Variant	rs292115
Chromosome Location	chr20:52867364-52867365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:52867284..52867978-chr20:52883331..52884092,2	MCF-7	breast:
2	chr20:52541071..52543392-chr20:52866334..52868827,2	MCF-7	breast:
3	chr20:46414313..46416675-chr20:52867121..52869732,2	MCF-7	breast:
4	chr20:52824081..52826054-chr20:52865932..52869454,4	MCF-7	breast:
5	chr20:52853983..52856679-chr20:52866149..52869118,2	MCF-7	breast:
6	chr20:52840265..52842144-chr20:52866787..52869345,2	MCF-7	breast:
7	chr20:52861957..52864454-chr20:52866467..52868333,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196562	Chromatin interaction
ENSG00000101132	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1477737	1.00[AMR][1000 genomes]
rs1812479	1.00[AMR][1000 genomes]
rs2169617	1.00[AMR][1000 genomes]
rs2426508	1.00[AMR][1000 genomes]
rs292116	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs292121	1.00[AMR][1000 genomes]
rs292124	1.00[AMR][1000 genomes]
rs292127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292130	1.00[AMR][1000 genomes]
rs292131	1.00[AMR][1000 genomes]
rs292133	1.00[AMR][1000 genomes]
rs292134	1.00[AMR][1000 genomes]
rs292136	1.00[AMR][1000 genomes]
rs292137	1.00[AMR][1000 genomes]
rs292138	1.00[AMR][1000 genomes]
rs292147	1.00[AMR][1000 genomes]
rs406902	1.00[AMR][1000 genomes]
rs409262	1.00[AMR][1000 genomes]
rs6097908	1.00[AMR][1000 genomes]
rs73912631	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	esv3454356	chr20:52866111-52867456	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3418146	chr20:52866140-52867424	Weak transcription Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3505594	chr20:52866166-52867379	Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3454357	chr20:52866174-52867401	Weak transcription Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3505593	chr20:52866181-52867454	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3505597	chr20:52866184-52867397	Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3505595	chr20:52866197-52867395	Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52865400-52871000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:52867200-52867600	Active TSS	A549	lung

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