Variant report

Variant	rs292134
Chromosome Location	chr20:52880672-52880673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1477737	1.00[AMR][1000 genomes]
rs1812479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2169617	1.00[AMR][1000 genomes]
rs2426508	1.00[AMR][1000 genomes]
rs292115	1.00[AMR][1000 genomes]
rs292121	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292127	1.00[AMR][1000 genomes]
rs292130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292131	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292147	1.00[AMR][1000 genomes]
rs406902	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs409262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6097908	1.00[AMR][1000 genomes]
rs73912631	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52872800-52883800	Weak transcription	Pancreas	Pancrea
2	chr20:52874200-52883600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr20:52874200-52884000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr20:52878800-52881200	Enhancers	Fetal Lung	lung
5	chr20:52879600-52881000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr20:52879600-52881200	Enhancers	Fetal Stomach	stomach
7	chr20:52879800-52883800	Weak transcription	Osteobl	bone
8	chr20:52880400-52880800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:52880400-52883400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr20:52880600-52880800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr20:52880600-52880800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr20:52880600-52880800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr20:52880600-52881400	Enhancers	Ovary	ovary
14	chr20:52880600-52884000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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